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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX84933
CDX88803
CDX89402
CDX89404
CDX92368
CDX93236
CDX93238
CDX94426
CDX94429
CDY03907
CDY07031
CDY07638
CDY09128
CDY15722
CDY27605
CDY35676
CDY49480
CDY61778
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17486.1 CDX84933 AT1G27300.1 21798944
AT4G17486.1 CDY03907 AT1G27300.1 21798944
AT4G17486.1 CDY15722 AT1G27300.1 21798944
AT4G17486.1 CDY27605 AT1G27300.1 21798944
AT4G17486.1 CDX93236 AT2G39760.1 21798944
AT4G17486.1 CDX93238 AT2G39760.1 21798944
AT4G17486.1 CDY07031 AT2G39760.1 21798944
AT4G17486.1 CDY07638 AT2G39760.1 21798944
AT4G17486.1 CDY61778 AT2G39760.1 21798944
AT4G17486.1 CDX89402 AT4G25660.1 21798944
AT4G17486.1 CDX89404 AT4G25660.1 21798944
AT4G17486.1 CDX94426 AT4G25660.1 21798944
AT4G17486.1 CDX94429 AT4G25660.1 21798944
AT4G17486.1 CDY49480 AT4G25660.1 21798944
AT4G17486.1 CDY66007 AT4G25660.1 21798944
AT4G17486.1 CDX89402 AT4G25680.1 21798944
AT4G17486.1 CDX89404 AT4G25680.1 21798944
AT4G17486.1 CDX94426 AT4G25680.1 21798944
AT4G17486.1 CDX94429 AT4G25680.1 21798944
AT4G17486.1 CDY49480 AT4G25680.1 21798944
AT4G17486.1 CDY66007 AT4G25680.1 21798944
AT4G17486.1 CDX70995 AT5G22290.1 21798944
AT4G17486.1 CDX88803 AT5G22290.1 21798944
AT4G17486.1 CDX92368 AT5G22290.1 21798944
AT4G17486.1 CDY09128 AT5G22290.1 21798944
AT4G17486.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76571 Canola cytosol 97.3 95.58
AT4G17486.1 Thale cress cytosol 91.89 91.07
CDY09624 Canola cytosol 83.78 86.51
CDX90471 Canola cytosol 82.88 85.98
CDY64684 Canola cytosol 73.42 67.08
CDX77757 Canola cytosol 72.97 66.67
PGSC0003DMT400067477 Potato cytosol 60.81 61.09
Solyc08g078220.2.1 Tomato cytosol 60.36 60.63
KRH28159 Soybean cytosol 60.81 60.27
KRH04183 Soybean cytosol 60.36 60.09
KRH57475 Soybean cytosol 59.91 59.64
KRH77327 Soybean cytosol 59.46 58.93
GSMUA_Achr4P30040_001 Banana mitochondrion 57.66 57.14
GSMUA_AchrUn_... Banana cytosol 54.05 55.81
Zm00001d026190_P001 Maize cytosol 51.8 55.29
EES11216 Sorghum cytosol 51.35 54.81
Os04t0548000-01 Rice cytosol 50.45 54.11
Zm00001d002758_P002 Maize cytosol 50.9 54.07
TraesCS6D01G225900.1 Wheat cytosol 47.75 51.71
Zm00001d017468_P001 Maize cytosol 48.65 51.67
TraesCS6A01G243700.2 Wheat cytosol 47.3 51.47
EER95706 Sorghum mitochondrion 54.05 51.28
TraesCS6B01G280600.1 Wheat cytosol 47.3 51.22
EES07522 Sorghum cytosol 48.2 51.2
TraesCS2A01G416700.1 Wheat cytosol 47.75 50.72
TraesCS2B01G435700.2 Wheat cytosol 47.3 50.48
Os02t0655500-01 Rice cytosol 45.95 50.0
TraesCS2D01G413700.1 Wheat cytosol 47.75 49.77
Os03t0100900-01 Rice plastid 54.5 49.39
TraesCS5A01G543200.2 Wheat cytosol, peroxisome, vacuole 51.35 49.14
TraesCS4B01G376300.2 Wheat vacuole 51.8 48.52
HORVU0Hr1G009550.1 Barley cytosol, peroxisome, plasma membrane 51.8 47.92
GSMUA_Achr1P00440_001 Banana mitochondrion 54.5 44.16
CDY65538 Canola cytosol, mitochondrion 41.89 42.27
CDY65539 Canola cytosol, mitochondrion 41.89 42.27
CDX88162 Canola cytosol, mitochondrion 41.89 42.27
CDY07077 Canola cytosol, mitochondrion 41.44 41.82
CDY05475 Canola mitochondrion 40.09 41.2
HORVU2Hr1G098080.1 Barley peroxisome 48.2 41.0
CDY05376 Canola cytosol, mitochondrion 39.64 40.74
Zm00001d027266_P001 Maize mitochondrion, plastid 53.15 39.73
CDX75209 Canola nucleus 39.64 38.26
CDY39951 Canola cytosol 38.74 37.72
CDX76766 Canola nucleus 40.09 37.71
CDY10616 Canola cytosol, nucleus, peroxisome 42.34 37.45
CDY62507 Canola nucleus, plasma membrane 40.54 37.34
CDX67961 Canola cytosol 37.84 36.84
CDX87334 Canola cytosol 38.29 36.64
CDY35370 Canola nucleus, plasma membrane 40.54 36.59
CDX79359 Canola cytosol 37.39 36.4
CDY17002 Canola nucleus 45.05 35.59
CDY25677 Canola nucleus 42.34 34.94
CDY17812 Canola nucleus 44.14 34.88
CDY23657 Canola nucleus 42.34 33.57
GSMUA_Achr5P12520_001 Banana plastid 53.15 32.33
CDX68806 Canola nucleus 39.64 28.39
CDY49480 Canola cytosol 22.97 20.16
CDX94426 Canola cytosol 22.52 19.84
CDY66007 Canola cytosol 22.52 19.68
CDX89402 Canola cytosol 21.62 19.12
CDX94429 Canola cytosol 20.27 18.37
CDX89404 Canola cytosol 20.27 18.37
CDY56277 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole 39.64 16.06
Protein Annotations
EnsemblPlants:CDY27921EnsemblPlantsGene:GSBRNA2T00038811001Gene3D:3.90.1720.30InterPro:PPPDE_domKEGG:00261+3.4.-.-KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-MEROPS:C97.A05PANTHER:PTHR12378PANTHER:PTHR12378:SF35PFAM:PF05903
ProteinID:CDY27921ProteinID:CDY27921.1SEG:segSMART:SM01179UniParc:UPI0004EC636BUniProt:A0A078GR72
MapMan:19.4.1.7:::::
Description
BnaCnng05060DBnaCnng05060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GR72]
Coordinates
chrLK032212:-:89695..91621
Molecular Weight (calculated)
25159.4 Da
IEP (calculated)
4.972
GRAVY (calculated)
-0.433
Length
222 amino acids
Sequence
(BLAST)
001: MWVPTLSSSS CSSDENTGEE ARLTPVYLNV YDLTPVNNYL YWFGIGIFHS GIESHGLEYC YGAHEYPTSG VYEVEPKNCP GFIFRRSVLL GTTTMSRSDF
101: RSYMEKLSRK YHGDTYHLIA KNCNHFTEQV CLQLTGKPVP GWINRLARVG SFCNCLLPES IQLTAVSAPS ERLEFSDEDE SNSEASSVSD DEGPEHRLIN
201: VADREVVYLQ NKPVRLTREE IH
Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
Arabidopsis Description
DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.