CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75209	Canola	nucleus	65.81	88.7
VIT_04s0008g05960.t01	Wine grape	mitochondrion	45.48	62.39
CDX76766	Canola	nucleus	46.45	61.02
CDY62507	Canola	nucleus, plasma membrane	47.42	61.0
CDY35370	Canola	nucleus, plasma membrane	48.39	60.98
KRH15787	Soybean	mitochondrion	42.26	60.93
KRH05264	Soybean	cytosol, mitochondrion	42.26	60.65
CDY05475	Canola	mitochondrion	42.26	60.65
CDX88162	Canola	cytosol, mitochondrion	42.9	60.45
CDY65539	Canola	cytosol, mitochondrion	42.9	60.45
CDY65538	Canola	cytosol, mitochondrion	42.9	60.45
CDY07077	Canola	cytosol, mitochondrion	42.9	60.45
CDY05376	Canola	cytosol, mitochondrion	41.29	59.26
KRH61696	Soybean	cytosol	39.03	55.76
KRH52364	Soybean	mitochondrion	40.0	55.36
CDX67961	Canola	cytosol	37.1	50.44
CDY39951	Canola	cytosol	37.1	50.44
CDX79359	Canola	cytosol	37.1	50.44
CDX87334	Canola	cytosol	37.1	49.57
CDY09624	Canola	cytosol	30.32	43.72
CDX90471	Canola	cytosol	30.0	43.46
CDY27921	Canola	cytosol	28.39	39.64
CDX77757	Canola	cytosol	30.32	38.68
CDX76571	Canola	cytosol	28.06	38.5
CDY64684	Canola	cytosol	30.0	38.27
CDY10616	Canola	cytosol, nucleus, peroxisome	30.32	37.45
CDY25677	Canola	nucleus	29.68	34.2
CDY17812	Canola	nucleus	30.65	33.81
CDY23657	Canola	nucleus	30.32	33.57
CDY17002	Canola	nucleus	30.32	33.45
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	48.39	27.37
CDX89404	Canola	cytosol	19.03	24.08
CDX94429	Canola	cytosol	19.03	24.08
CDY49480	Canola	cytosol	19.35	23.72
CDX89402	Canola	cytosol	19.03	23.51
CDY66007	Canola	cytosol	19.03	23.23
CDX94426	Canola	cytosol	18.71	23.02

Protein Annotations

EnsemblPlants:CDX68806	EnsemblPlantsGene:GSBRNA2T00130525001	Gene3D:1.10.1620.10	Gene3D:3.90.1720.30	InterPro:IPR023626	InterPro:PPPDE_dom
InterPro:Ribosomal_L39e_dom_sf	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A07
PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	ProteinID:CDX68806	ProteinID:CDX68806.1	SEG:seg
SMART:SM01179	UniParc:UPI0004EDD28F	MapMan:19.4.1.7	:	:	:

Description

BnaC01g06470D

Coordinates

chrLK031789:+:1377323..1382441

Molecular Weight (calculated)

35156.3 Da

IEP (calculated)

10.078

GRAVY (calculated)

-0.601

Length

310 amino acids

Sequence
(BLAST)

001: MMFCRNVSVR RKKKKNPGSV PVYLNVYDLT PMNVYGYWLG IGIYHSGLEV HGVEYGYGAH EHSSTGIFKV EPKKCPGFTF RKSILVGETE MKAKEVGSFM
101: EELADEYQGS KYHLITRNCN HFCNDVCLKL TQKSIPSWVN RLARLGFLCN CVLPASLNEM KVKQVGTDGK LLEVGESKKN KKKKKKKKAR SRSGPLASSS
201: SDARVSSRHF SSFSFAHPQL HIARLQDAVP QVVYDKEEAG QKDEAKQAYP SLDSSSYRQH YQGDNGRNQK CNCCLCGLSS DTLVVKPEIK LLSLWYNAKR
301: RHWRRTKLGF

Best Arabidopsis Sequence Match ( AT4G31980.1 )
(BLAST)

001: MFCRNVSVRR KKNSGTVPVY LNVYDLTPMN VYGYWLGIGI YHSGLEVHGV EYGYGAHEKS SSGIFEVEPK KCPGFTFRKS ILVGETEMKA KEVRSFMEKL
101: SEEYQGNKYH LITRNCNHFC NHVSLKLTHK SIPSWVNRLA RLGFLCNCVL PACLNETKVK RVGKDGKLLL EGENTKKKKR KKKIRRSRSG PLSSSSSNAR
201: LDNTPTHNRS ISTGNPPLSA SPSCPLRPRL PSVASGAEDQ NPPSRYLNAS FCSEVQCHRL CFAYERMNQN EGDALVDSIK AKLAFLSSLS TKCCIYKVPN
301: KLRRLNPDAY TPRLVSFGPL HRGKEELQAM EDQKYRYLLS FIPRTNSSLE DLVRLARTWE QNARSCYAED VKLHSDEFVE MLVVDGSFLV ELLLRSHYPR
401: LRGENDRIFG NSMMITDVCR DMILIENQLP FFVVKEIFLL LLNYYQQGTP SIIQLAQRHF SYFLSRIDDE KFITEPEHFV DLLRSCYLPQ FPIKLEYTTV
501: KVDNAPEATE LHTAGVRFKP AETSSCLLDI SFADGVLKIP TIVVDDLTES LYKNIIGFEQ CRCSNKNFLD YIMLLGCFIK SPTDADLLIH SGIIVNYLGN
601: SVDVSNLFNS ISKEVIYDRR FYFSMLSENL QAYCNTPWNR WKAILRRDYF HNPWAVASVF AALLLLLLTF IQSVCSILAL

Arabidopsis Description

PPPDE thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:O49393]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.