CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
nucleus 3
cytosol 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH03466
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	KRH03466	AT3G47620.1	21798944
AT5G25170.1	KRH54542	AT3G47620.1	21798944
AT5G25170.1	KRH56919	AT3G47620.1	21798944
AT5G25170.1	KRH63357	AT3G47620.1	21798944
AT5G25170.1	KRG88927	AT4G00150.1	21798944
AT5G25170.1	KRH65380	AT4G00150.1	21798944
AT5G25170.1	KRH75351	AT4G00150.1	21798944
AT5G25170.1	KRH76167	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05264	Soybean	cytosol, mitochondrion	95.81	95.37
KRH52364	Soybean	mitochondrion	80.93	77.68
KRH61696	Soybean	cytosol	77.21	76.5
VIT_04s0008g05960.t01	Wine grape	mitochondrion	73.95	70.35
AT5G25170.1	Thale cress	cytosol, mitochondrion	68.37	67.43
Bra009823.1-P	Field mustard	cytosol, mitochondrion	67.91	66.36
CDY07077	Canola	cytosol, mitochondrion	67.91	66.36
CDX88162	Canola	cytosol, mitochondrion	66.51	65.0
CDY65539	Canola	cytosol, mitochondrion	66.51	65.0
CDY65538	Canola	cytosol, mitochondrion	66.51	65.0
CDY05475	Canola	mitochondrion	64.65	64.35
Bra020487.1-P	Field mustard	mitochondrion	64.65	64.35
CDY05376	Canola	cytosol, mitochondrion	63.26	62.96
KRH44526	Soybean	mitochondrion	59.53	58.99
KRH47381	Soybean	cytosol	59.07	57.99
AT2G25190.1	Thale cress	nucleus, vacuole	61.86	55.42
Bra011312.1-P	Field mustard	nucleus	59.07	55.22
CDX75209	Canola	nucleus	59.07	55.22
CDX76766	Canola	nucleus	60.47	55.08
CDY35370	Canola	nucleus, plasma membrane	61.86	54.06
CDY62507	Canola	nucleus, plasma membrane	60.0	53.53
Bra032034.1-P	Field mustard	nucleus, plasma membrane	61.86	53.41
KRH38144	Soybean	mitochondrion	50.7	50.7
KRH05795	Soybean	mitochondrion	53.95	46.22
KRH15239	Soybean	mitochondrion	53.95	46.22
KRG89196	Soybean	mitochondrion	51.16	43.82
KRH57475	Soybean	cytosol	44.65	43.05
KRH49521	Soybean	mitochondrion	50.23	43.03
KRH28159	Soybean	cytosol	44.65	42.86
KRH77327	Soybean	cytosol	44.65	42.86
KRH03735	Soybean	nucleus	44.65	42.67
KRH04183	Soybean	cytosol	44.19	42.6
CDX68806	Canola	nucleus	60.93	42.26
KRH63012	Soybean	nucleus	41.86	39.13
KRH54877	Soybean	cytosol, peroxisome	33.95	38.62
KRH08874	Soybean	cytosol	31.16	27.35
KRH35244	Soybean	cytosol, peroxisome, plastid	29.77	26.67
KRH38387	Soybean	cytosol	30.7	26.61
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	62.79	24.64
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	62.33	24.45

Protein Annotations

EMBL:ACUP02008653	EnsemblPlants:KRH15787	EnsemblPlantsGene:GLYMA_14G111300	EntrezGene:100810627	Gene3D:3.90.1720.30	InterPro:PPPDE_dom
MEROPS:C97.A06	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	ProteinID:KRH15787	ProteinID:KRH15787.1
SEG:seg	SMART:SM01179	UniParc:UPI000233BC93	UniProt:I1M9F3	MapMan:19.4.1.7	:

Description

hypothetical protein

Coordinates

chr14:+:12621065..12624356

Molecular Weight (calculated)

24059.9 Da

IEP (calculated)

9.237

GRAVY (calculated)

-0.402

Length

215 amino acids

Sequence
(BLAST)

001: MLCKLVPRKK KPGSNPVYLN VYDLTPINGY AYWLGLGVYH SGVQVHGVEY GFGAHERDTT GIFEVEPGHC PGFTFRKSIF IGSTDMGPKD VRVFMERLAD
101: EYSGNTYHLI QKNCNHFCED LCFRLTGKSI PRWVNRLARL GFLCNCVLPP SLNETKVRQV TLDRVQEGGE KKKMRSQSSR YEASPNPALS SSQRHCLPPS
201: SSVINASPSS TLTVK

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.