CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54877	Soybean	cytosol, peroxisome	70.87	86.24
KRH03735	Soybean	nucleus	70.87	72.44
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	65.65	70.56
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	56.52	60.47
Solyc12g006880.1.1	Tomato	cytosol	57.83	59.38
PGSC0003DMT400002750	Potato	cytosol	57.83	59.38
GSMUA_Achr2P19400_001	Banana	plastid	53.91	57.14
TraesCS7B01G270200.1	Wheat	cytosol	50.43	56.31
TraesCS7A01G357600.1	Wheat	cytosol	50.43	56.31
TraesCS7D01G365100.1	Wheat	cytosol	50.0	55.83
EER89945	Sorghum	cytosol	49.57	54.03
Zm00001d046249_P001	Maize	cytosol	49.13	53.55
Os06t0560400-01	Rice	cytosol	50.0	53.24
KRH04183	Soybean	cytosol	48.26	49.78
KRH57475	Soybean	cytosol	48.26	49.78
KRH28159	Soybean	cytosol	48.26	49.55
KRH77327	Soybean	cytosol	46.96	48.21
KRH05264	Soybean	cytosol, mitochondrion	39.57	42.13
KRH15787	Soybean	mitochondrion	39.13	41.86
KRH38144	Soybean	mitochondrion	38.7	41.4
KRG89196	Soybean	mitochondrion	44.35	40.64
KRH49521	Soybean	mitochondrion	43.91	40.24
KRH15239	Soybean	mitochondrion	43.48	39.84
KRH05795	Soybean	mitochondrion	43.48	39.84
KRH61696	Soybean	cytosol	36.52	38.71
KRH52364	Soybean	mitochondrion	36.96	37.95
KRH44526	Soybean	mitochondrion	34.78	36.87
KRH47381	Soybean	cytosol	34.78	36.53
KRH35244	Soybean	cytosol, peroxisome, plastid	23.91	22.92
KRH08874	Soybean	cytosol	23.04	21.63
KRH38387	Soybean	cytosol	23.04	21.37

Protein Annotations

EMBL:ACUP02002547	EnsemblPlants:KRH63012	EnsemblPlantsGene:GLYMA_04G148900	EntrezGene:100810582	Gene3D:3.90.1720.30	InterPro:PPPDE_dom
PANTHER:PTHR12378	PANTHER:PTHR12378:SF13	PFAM:PF05903	ProteinID:KRH63012	ProteinID:KRH63012.1	SEG:seg
SMART:SM01179	UniParc:UPI000233A9A5	UniProt:I1JW53	MapMan:19.4.1.7	:	:

Description

hypothetical protein

Coordinates

chr4:+:31173445..31176923

Molecular Weight (calculated)

25656.9 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.488

Length

230 amino acids

Sequence
(BLAST)

001: MGTTKNNNNN FNSTSKSDNS ANDNKNNTRV VLNVYDLTPL NNYLYWFGFG IFHSGIEVHG KEYGFGAHDF PASGVFEVEP RKCPGFVYRC SVTLGQVNMH
101: PSEFRTFIEG IANEYHGDTY HLISKNCNHF TDDMSHRLSG KRIPGWVNRL AKLGSLCSCL LPEVVEVTTV KQLPEYHECS EDEITECLST ASPCGSQSTS
201: GLDDDQEKRL LSPLASKTDN VSFVKEALLK

Best Arabidopsis Sequence Match ( AT1G47740.1 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.