CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH03466
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	KRH03466	AT3G47620.1	21798944
AT5G25170.1	KRH54542	AT3G47620.1	21798944
AT5G25170.1	KRH56919	AT3G47620.1	21798944
AT5G25170.1	KRH63357	AT3G47620.1	21798944
AT5G25170.1	KRG88927	AT4G00150.1	21798944
AT5G25170.1	KRH65380	AT4G00150.1	21798944
AT5G25170.1	KRH75351	AT4G00150.1	21798944
AT5G25170.1	KRH76167	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61696	Soybean	cytosol	91.96	94.93
KRH05264	Soybean	cytosol, mitochondrion	78.57	81.48
KRH15787	Soybean	mitochondrion	77.68	80.93
VIT_04s0008g05960.t01	Wine grape	mitochondrion	69.64	69.03
AT5G25170.1	Thale cress	cytosol, mitochondrion	63.39	65.14
CDY07077	Canola	cytosol, mitochondrion	63.84	65.0
Bra009823.1-P	Field mustard	cytosol, mitochondrion	63.84	65.0
CDX88162	Canola	cytosol, mitochondrion	62.5	63.64
CDY65538	Canola	cytosol, mitochondrion	62.5	63.64
CDY65539	Canola	cytosol, mitochondrion	62.5	63.64
Bra020487.1-P	Field mustard	mitochondrion	61.16	63.43
CDY05475	Canola	mitochondrion	61.16	63.43
CDY05376	Canola	cytosol, mitochondrion	60.27	62.5
KRH44526	Soybean	mitochondrion	55.8	57.6
KRH47381	Soybean	cytosol	55.8	57.08
AT2G25190.1	Thale cress	nucleus, vacuole	58.93	55.0
CDX76766	Canola	nucleus	57.14	54.24
CDY35370	Canola	nucleus, plasma membrane	58.04	52.85
CDY62507	Canola	nucleus, plasma membrane	56.25	52.28
Bra032034.1-P	Field mustard	nucleus, plasma membrane	58.04	52.21
Bra011312.1-P	Field mustard	nucleus	53.12	51.74
CDX75209	Canola	nucleus	53.12	51.74
KRH38144	Soybean	mitochondrion	46.88	48.84
KRH05795	Soybean	mitochondrion	50.0	44.62
KRH15239	Soybean	mitochondrion	49.55	44.22
KRG89196	Soybean	mitochondrion	46.88	41.83
KRH49521	Soybean	mitochondrion	45.98	41.04
KRH28159	Soybean	cytosol	40.62	40.62
KRH77327	Soybean	cytosol	40.18	40.18
CDX68806	Canola	nucleus	55.36	40.0
KRH57475	Soybean	cytosol	39.73	39.91
KRH04183	Soybean	cytosol	39.29	39.46
KRH03735	Soybean	nucleus	39.29	39.11
KRH63012	Soybean	nucleus	37.95	36.96
KRH54877	Soybean	cytosol, peroxisome	30.8	36.51
KRH08874	Soybean	cytosol	28.57	26.12
KRH38387	Soybean	cytosol	28.12	25.4
KRH35244	Soybean	cytosol, peroxisome, plastid	26.79	25.0
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	58.93	24.09
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	58.48	23.91

Protein Annotations

EMBL:ACUP02003419	EMBL:BT090899	EnsemblPlants:KRH52364	EnsemblPlantsGene:GLYMA_06G063800	EntrezGene:100306675	Gene3D:3.90.1720.30
InterPro:PPPDE_dom	MEROPS:C97.A06	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	ProteinID:KRH52364
ProteinID:KRH52364.1	SEG:seg	SMART:SM01179	UniParc:UPI0001B15421	UniProt:C6T0E5	MapMan:19.4.1.7

Description

hypothetical protein

Coordinates

chr6:+:4847207..4849286

Molecular Weight (calculated)

24645.4 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.437

Length

224 amino acids

Sequence
(BLAST)

001: MLRKLVSGPR KNKPGTVPVH LNVYDLTPIN GYAYWLGLGV YHSGVQVHGL EYGFGAHEHD TTGIFEVQPK HCPGFTFRKS IFIGTTDLGP KDVRAFMEKL
101: AQDYSGNTYH LISKNCNHFC NDVCLKLTGK SIPRWVNRLA RLGLLCNCVL PPGLNDTKVS QAASDRVQEG EKRKIRSQSC RYEGSSNPSS SQRSAIKSSS
201: SQRHCHPPSS SLINAASAST LTVK

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.