CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011312.1-P	Field mustard	nucleus	100.0	100.0
CDX68806	Canola	nucleus	88.7	65.81
KRH15787	Soybean	mitochondrion	55.22	59.07
KRH05264	Soybean	cytosol, mitochondrion	55.22	58.8
VIT_04s0008g05960.t01	Wine grape	mitochondrion	56.96	57.96
CDY65538	Canola	cytosol, mitochondrion	55.22	57.73
CDX88162	Canola	cytosol, mitochondrion	55.22	57.73
CDY65539	Canola	cytosol, mitochondrion	55.22	57.73
CDY05475	Canola	mitochondrion	53.91	57.41
CDY07077	Canola	cytosol, mitochondrion	54.78	57.27
CDX76766	Canola	nucleus	58.7	57.2
CDY35370	Canola	nucleus, plasma membrane	60.43	56.5
CDY62507	Canola	nucleus, plasma membrane	59.13	56.43
CDY05376	Canola	cytosol, mitochondrion	52.61	56.02
KRH61696	Soybean	cytosol	50.87	53.92
KRH52364	Soybean	mitochondrion	51.74	53.12
CDX79359	Canola	cytosol	48.26	48.68
CDY39951	Canola	cytosol	48.26	48.68
CDX87334	Canola	cytosol	48.26	47.84
CDX67961	Canola	cytosol	47.39	47.81
CDY09624	Canola	cytosol	40.87	43.72
CDX90471	Canola	cytosol	40.43	43.46
CDY27921	Canola	cytosol	38.26	39.64
CDX76571	Canola	cytosol	37.83	38.5
CDX77757	Canola	cytosol	40.43	38.27
CDY64684	Canola	cytosol	40.0	37.86
CDY10616	Canola	cytosol, nucleus, peroxisome	39.13	35.86
CDY25677	Canola	nucleus	39.13	33.46
CDY17812	Canola	nucleus	39.57	32.38
CDY23657	Canola	nucleus	39.13	32.14
CDY17002	Canola	nucleus	39.13	32.03
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	57.83	24.27
CDX89404	Canola	cytosol	24.78	23.27
CDX94429	Canola	cytosol	24.35	22.86
CDX89402	Canola	cytosol	24.78	22.71
CDX94426	Canola	cytosol	24.35	22.22
CDY49480	Canola	cytosol	24.35	22.13
CDY66007	Canola	cytosol	23.91	21.65

Protein Annotations

EnsemblPlants:CDX75209	EnsemblPlantsGene:GSBRNA2T00121058001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A07	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903
ProteinID:CDX75209	ProteinID:CDX75209.1	SEG:seg	SMART:SM01179	UniParc:UPI0002546629	MapMan:19.4.1.7

Description

BnaA01g04930D

Coordinates

chrLK031804:+:132105..133540

Molecular Weight (calculated)

25772.3 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.546

Length

230 amino acids

Sequence
(BLAST)

001: MMFCRNVCVR RKKKKNPGSV PVYLNVYDLT PMNVYGYWLG IGIYHSGLEV HGVEYGYGAH EHSSTGIFKV EPKKCPGFTF RKSILVGETE MKAKEIGSFM
101: EELSDEYQGS KYHLITRNCN HFCNDVCLKL TQKSIPSWVN RLARLGFLCN CVLPASLNEM KVKQVGKDGK LLEVGESKKN KKKKKQKKAR SRSGPLASSS
201: DSRLDNNKPS HARSISTGNP PCSASFCPLK

Best Arabidopsis Sequence Match ( AT4G31980.1 )
(BLAST)

001: MFCRNVSVRR KKNSGTVPVY LNVYDLTPMN VYGYWLGIGI YHSGLEVHGV EYGYGAHEKS SSGIFEVEPK KCPGFTFRKS ILVGETEMKA KEVRSFMEKL
101: SEEYQGNKYH LITRNCNHFC NHVSLKLTHK SIPSWVNRLA RLGFLCNCVL PACLNETKVK RVGKDGKLLL EGENTKKKKR KKKIRRSRSG PLSSSSSNAR
201: LDNTPTHNRS ISTGNPPLSA SPSCPLRPRL PSVASGAEDQ NPPSRYLNAS FCSEVQCHRL CFAYERMNQN EGDALVDSIK AKLAFLSSLS TKCCIYKVPN
301: KLRRLNPDAY TPRLVSFGPL HRGKEELQAM EDQKYRYLLS FIPRTNSSLE DLVRLARTWE QNARSCYAED VKLHSDEFVE MLVVDGSFLV ELLLRSHYPR
401: LRGENDRIFG NSMMITDVCR DMILIENQLP FFVVKEIFLL LLNYYQQGTP SIIQLAQRHF SYFLSRIDDE KFITEPEHFV DLLRSCYLPQ FPIKLEYTTV
501: KVDNAPEATE LHTAGVRFKP AETSSCLLDI SFADGVLKIP TIVVDDLTES LYKNIIGFEQ CRCSNKNFLD YIMLLGCFIK SPTDADLLIH SGIIVNYLGN
601: SVDVSNLFNS ISKEVIYDRR FYFSMLSENL QAYCNTPWNR WKAILRRDYF HNPWAVASVF AALLLLLLTF IQSVCSILAL

Arabidopsis Description

PPPDE thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:O49393]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.