Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62507 | Canola | nucleus, plasma membrane | 85.59 | 83.82 |
| CDY35370 | Canola | nucleus, plasma membrane | 86.44 | 82.93 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 82.63 | 81.25 |
| VIT_04s0008g05960.t01 | Wine grape | mitochondrion | 58.9 | 61.5 |
| KRH05264 | Soybean | cytosol, mitochondrion | 55.93 | 61.11 |
| KRH15787 | Soybean | mitochondrion | 55.08 | 60.47 |
| CDX75209 | Canola | nucleus | 57.2 | 58.7 |
| CDY05475 | Canola | mitochondrion | 52.97 | 57.87 |
| CDY07077 | Canola | cytosol, mitochondrion | 53.81 | 57.73 |
| CDY65538 | Canola | cytosol, mitochondrion | 53.81 | 57.73 |
| CDY65539 | Canola | cytosol, mitochondrion | 53.81 | 57.73 |
| CDX88162 | Canola | cytosol, mitochondrion | 53.81 | 57.73 |
| KRH52364 | Soybean | mitochondrion | 54.24 | 57.14 |
| KRH61696 | Soybean | cytosol | 52.54 | 57.14 |
| CDY05376 | Canola | cytosol, mitochondrion | 52.12 | 56.94 |
| CDY39951 | Canola | cytosol | 49.58 | 51.32 |
| CDX67961 | Canola | cytosol | 48.73 | 50.44 |
| CDX87334 | Canola | cytosol | 49.58 | 50.43 |
| CDX79359 | Canola | cytosol | 47.88 | 49.56 |
| CDX68806 | Canola | nucleus | 61.02 | 46.45 |
| CDY09624 | Canola | cytosol | 40.68 | 44.65 |
| CDX90471 | Canola | cytosol | 40.25 | 44.39 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 93.64 | 40.33 |
| CDY27921 | Canola | cytosol | 37.71 | 40.09 |
| CDX76571 | Canola | cytosol | 38.14 | 39.82 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 41.95 | 39.44 |
| CDX77757 | Canola | cytosol | 38.98 | 37.86 |
| CDY64684 | Canola | cytosol | 38.56 | 37.45 |
| CDY25677 | Canola | nucleus | 41.95 | 36.8 |
| CDY17812 | Canola | nucleus | 43.22 | 36.3 |
| CDY17002 | Canola | nucleus | 42.37 | 35.59 |
| CDY23657 | Canola | nucleus | 41.95 | 35.36 |
| CDX89404 | Canola | cytosol | 24.15 | 23.27 |
| CDY49480 | Canola | cytosol | 24.58 | 22.92 |
| CDX94429 | Canola | cytosol | 23.73 | 22.86 |
| CDY66007 | Canola | cytosol | 24.15 | 22.44 |
| CDX94426 | Canola | cytosol | 23.73 | 22.22 |
| CDX89402 | Canola | cytosol | 22.88 | 21.51 |
Protein Annotations
| EnsemblPlants:CDX76766 | EnsemblPlantsGene:GSBRNA2T00127260001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MEROPS:C97.A08 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF12 | PFAM:PF05903 |
| ProteinID:CDX76766 | ProteinID:CDX76766.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EF3B63 | MapMan:19.4.1.7 |
Description
BnaC08g33520D
Coordinates
chrLK031808:-:958818..960101
Molecular Weight (calculated)
26645.0 Da
IEP (calculated)
10.409
GRAVY (calculated)
-0.673
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCWSGSVRR KQKPGHFPVY LNVYDLTPMN AYGYWLGLGV FHSGVEVHGV EYAFGAHEYP STGIFEVEPK KCPGFTFRKS ILVGKTDKCA RDVRVYMEKL
101: AEEYRGNKYN LISRNCNHFC NEVCVKLTQK PIPRWVNRLA RLGVLCNCVL PPRLNESKVR RVVKEELSEG EKKKKKMMNT SRSGPLLSTS SSSSTSDNNH
201: RSHIRAKSTG NHSSSGSKKS QRQAQDKKSP SVSVKT
101: AEEYRGNKYN LISRNCNHFC NEVCVKLTQK PIPRWVNRLA RLGVLCNCVL PPRLNESKVR RVVKEELSEG EKKKKKMMNT SRSGPLLSTS SSSSTSDNNH
201: RSHIRAKSTG NHSSSGSKKS QRQAQDKKSP SVSVKT
001: MLCFKGSVKR KKQSGSVPVY LNVYDLTPMN AYGYWLGLGV FHSGVEVHGV EYAFGAHESS STGIFEVEPK KCPGFTFRKS ILVGKTDLVA KEVRVFMEKL
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O81728]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.