CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10616	Canola	cytosol, nucleus, peroxisome	87.36	93.63
CDY23657	Canola	nucleus	97.03	93.21
AT1G47740.3	Thale cress	nucleus	91.45	88.17
CDY17002	Canola	nucleus	88.1	84.34
CDY17812	Canola	nucleus	88.1	84.34
VIT_18s0001g12090.t01	Wine grape	mitochondrion	64.31	70.04
KRH05795	Soybean	mitochondrion	63.94	68.53
Solyc12g089060.1.1	Tomato	mitochondrion	62.83	68.42
PGSC0003DMT400039949	Potato	mitochondrion	62.45	68.02
KRH15239	Soybean	mitochondrion	63.2	67.73
GSMUA_Achr7P25980_001	Banana	mitochondrion	52.04	67.31
Solyc04g080030.2.1	Tomato	mitochondrion	57.25	63.37
KRH38144	Soybean	mitochondrion	50.56	63.26
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	53.9	63.04
KRH49521	Soybean	mitochondrion	58.74	62.95
KRG89196	Soybean	mitochondrion	58.74	62.95
Zm00001d028130_P001	Maize	mitochondrion	56.88	61.2
Os03t0198500-01	Rice	mitochondrion	55.39	60.32
EER95329	Sorghum	mitochondrion	56.51	60.32
Zm00001d048173_P001	Maize	mitochondrion	56.51	60.08
TraesCS4A01G040500.1	Wheat	mitochondrion	55.02	59.68
TraesCS4D01G261500.1	Wheat	mitochondrion	55.02	59.68
PGSC0003DMT400064873	Potato	nucleus	55.02	59.44
Solyc01g109430.2.1	Tomato	cytosol, mitochondrion, nucleus	55.02	59.44
TraesCS4B01G261700.1	Wheat	mitochondrion	54.65	59.27
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	56.13	58.53
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	35.69	58.18
KXG39054	Sorghum	plastid	53.16	57.66
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	54.28	56.15
PGSC0003DMT400071605	Potato	mitochondrion	59.11	55.79
CDY05475	Canola	mitochondrion	39.03	48.61
CDY07077	Canola	cytosol, mitochondrion	39.03	47.73
CDY05376	Canola	cytosol, mitochondrion	38.29	47.69
CDY65538	Canola	cytosol, mitochondrion	38.66	47.27
CDY65539	Canola	cytosol, mitochondrion	38.66	47.27
CDX88162	Canola	cytosol, mitochondrion	38.66	47.27
HORVU4Hr1G070620.3	Barley	cytosol, nucleus, plastid	57.25	46.67
VIT_03s0063g02130.t01	Wine grape	mitochondrion	57.62	46.27
CDX90471	Canola	cytosol	36.06	45.33
CDY39951	Canola	cytosol	37.92	44.74
CDY09624	Canola	cytosol	35.69	44.65
CDX67961	Canola	cytosol	37.17	43.86
CDX79359	Canola	cytosol	37.17	43.86
CDX87334	Canola	cytosol	37.55	43.53
CDX76571	Canola	cytosol	35.69	42.48
CDY27921	Canola	cytosol	34.94	42.34
CDX76766	Canola	nucleus	36.8	41.95
CDX77757	Canola	cytosol	36.43	40.33
CDY64684	Canola	cytosol	36.06	39.92
CDY35370	Canola	nucleus, plasma membrane	36.43	39.84
CDY62507	Canola	nucleus, plasma membrane	35.32	39.42
CDX75209	Canola	nucleus	33.46	39.13
CDX68806	Canola	nucleus	34.2	29.68
CDY49480	Canola	cytosol	19.7	20.95
CDY66007	Canola	cytosol	19.7	20.87
CDX94426	Canola	cytosol	18.96	20.24
CDX89402	Canola	cytosol	18.59	19.92
CDX89404	Canola	cytosol	17.84	19.59
CDX94429	Canola	cytosol	17.84	19.59
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	36.43	17.88

Protein Annotations

EnsemblPlants:CDY25677	EnsemblPlantsGene:GSBRNA2T00033011001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A09	PANTHER:PTHR12378	PANTHER:PTHR12378:SF11	PFAM:PF05903
ProteinID:CDY25677	ProteinID:CDY25677.1	SEG:seg	SMART:SM01179	UniParc:UPI0004EF4194	UniProt:A0A078GKJ7
MapMan:19.4.1.7	:	:	:	:	:

Description

BnaC05g25560DBnaC05g25560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKJ7]

Coordinates

chrLK032178:-:522104..524468

Molecular Weight (calculated)

30328.6 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.332

Length

269 amino acids

Sequence
(BLAST)

001: MLKGEAEPKQ KKAGWSESLL EFLSGLGEKM KTEPKKRWKS LAPLHLKSKS VARFCFFSKI KSNNYGPGRA PVYLNVYDLT PINGYIYWAG LGIFHSGVEV
101: HGAEYAFGAH DYANSGVFEV EPRQCPGFKF KKSIFIGTTN LNPAQVREFM ENMACSYYGN MYHLIVKNCN HFCQDACYKL TGKKIPQWVN RLAEIGSVCS
201: CILPESLKIT AVCHDPDEQI PEEENEKRSL TSSFSCLSSI SLRQKQLSTS SLFLQSPLRG CLPPFQLKR

Best Arabidopsis Sequence Match ( AT1G47740.3 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.