Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032034.1-P | Field mustard | nucleus, plasma membrane | 99.19 | 97.99 |
| CDY62507 | Canola | nucleus, plasma membrane | 94.31 | 96.27 |
| CDX76766 | Canola | nucleus | 82.93 | 86.44 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 81.3 | 83.33 |
| VIT_04s0008g05960.t01 | Wine grape | mitochondrion | 59.76 | 65.04 |
| KRH05264 | Soybean | cytosol, mitochondrion | 55.28 | 62.96 |
| KRH15787 | Soybean | mitochondrion | 54.06 | 61.86 |
| CDY07077 | Canola | cytosol, mitochondrion | 54.47 | 60.91 |
| CDY05475 | Canola | mitochondrion | 53.25 | 60.65 |
| CDX88162 | Canola | cytosol, mitochondrion | 54.06 | 60.45 |
| CDY65539 | Canola | cytosol, mitochondrion | 54.06 | 60.45 |
| CDY65538 | Canola | cytosol, mitochondrion | 54.06 | 60.45 |
| CDX75209 | Canola | nucleus | 56.5 | 60.43 |
| CDY05376 | Canola | cytosol, mitochondrion | 52.03 | 59.26 |
| KRH61696 | Soybean | cytosol | 52.03 | 58.99 |
| KRH52364 | Soybean | mitochondrion | 52.85 | 58.04 |
| CDY39951 | Canola | cytosol | 48.78 | 52.63 |
| CDX87334 | Canola | cytosol | 48.78 | 51.72 |
| CDX67961 | Canola | cytosol | 47.56 | 51.32 |
| CDX79359 | Canola | cytosol | 46.75 | 50.44 |
| CDX68806 | Canola | nucleus | 60.98 | 48.39 |
| CDY09624 | Canola | cytosol | 39.43 | 45.12 |
| CDX90471 | Canola | cytosol | 39.02 | 44.86 |
| CDY27921 | Canola | cytosol | 36.59 | 40.54 |
| CDX76571 | Canola | cytosol | 36.99 | 40.27 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 39.84 | 39.04 |
| CDX77757 | Canola | cytosol | 38.21 | 38.68 |
| CDY64684 | Canola | cytosol | 37.8 | 38.27 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 82.52 | 37.04 |
| CDY25677 | Canola | nucleus | 39.84 | 36.43 |
| CDY17812 | Canola | nucleus | 40.65 | 35.59 |
| CDY23657 | Canola | nucleus | 39.84 | 35.0 |
| CDY17002 | Canola | nucleus | 39.84 | 34.88 |
| CDX89404 | Canola | cytosol | 23.58 | 23.67 |
| CDY49480 | Canola | cytosol | 23.98 | 23.32 |
| CDX94429 | Canola | cytosol | 23.17 | 23.27 |
| CDY66007 | Canola | cytosol | 23.58 | 22.83 |
| CDX94426 | Canola | cytosol | 23.17 | 22.62 |
| CDX89402 | Canola | cytosol | 22.36 | 21.91 |
Protein Annotations
| EnsemblPlants:CDY35370 | EnsemblPlantsGene:GSBRNA2T00058347001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MEROPS:C97.A08 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF12 | PFAM:PF05903 |
| ProteinID:CDY35370 | ProteinID:CDY35370.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EEFA43 | UniProt:A0A078HA85 |
| MapMan:19.4.1.7 | : | : | : | : | : |
Description
BnaA04g14770DBnaA04g14770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA85]
Coordinates
chrLK032350:-:359128..360677
Molecular Weight (calculated)
27320.8 Da
IEP (calculated)
10.514
GRAVY (calculated)
-0.588
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCWKGSSVR RKEKTGLLPV YLNVYDLTPM NAYGYWLGLG VFHSGVEVHG VEYAFGAHEA PSTGIFEVEP KKCPGFTFRK SILVGKTDMA AKEVRVFMEK
101: LAEEYRGNKY NLISRNCNHF CNEVCVKLTQ KPIPRWVNRL ARLGVLCNCV LPPRFNETKV RRVVKGELSE EERKKRRNRS RSGPLLSTSS SSSTPDSHGS
201: HIRAKSTGNP SSSSSTSGSK KSKKQCAPPT APRAPDQKSP SVSVKT
101: LAEEYRGNKY NLISRNCNHF CNEVCVKLTQ KPIPRWVNRL ARLGVLCNCV LPPRFNETKV RRVVKGELSE EERKKRRNRS RSGPLLSTSS SSSTPDSHGS
201: HIRAKSTGNP SSSSSTSGSK KSKKQCAPPT APRAPDQKSP SVSVKT
001: MLCFKGSVKR KKQSGSVPVY LNVYDLTPMN AYGYWLGLGV FHSGVEVHGV EYAFGAHESS STGIFEVEPK KCPGFTFRKS ILVGKTDLVA KEVRVFMEKL
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O81728]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.