Factsheet for VIT_04s0008g05960.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g00270.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G25170.1	VIT_15s0048g00270.t01	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15787	Soybean	mitochondrion	70.35	73.95
KRH05264	Soybean	cytosol, mitochondrion	70.35	73.61
AT5G25170.1	Thale cress	cytosol, mitochondrion	70.8	73.39
Bra009823.1-P	Field mustard	cytosol, mitochondrion	70.8	72.73
CDY07077	Canola	cytosol, mitochondrion	70.8	72.73
CDY65539	Canola	cytosol, mitochondrion	69.91	71.82
CDX88162	Canola	cytosol, mitochondrion	69.91	71.82
CDY65538	Canola	cytosol, mitochondrion	69.91	71.82
KRH61696	Soybean	cytosol	68.14	70.97
Bra020487.1-P	Field mustard	mitochondrion	67.7	70.83
CDY05475	Canola	mitochondrion	67.7	70.83
KRH52364	Soybean	mitochondrion	69.03	69.64
CDY05376	Canola	cytosol, mitochondrion	66.37	69.44
VIT_09s0002g08960.t01	Wine grape	plasma membrane	65.49	64.63
CDY35370	Canola	nucleus, plasma membrane	65.04	59.76
AT2G25190.1	Thale cress	nucleus, vacuole	63.27	59.58
CDX76766	Canola	nucleus	61.5	58.9
CDY62507	Canola	nucleus, plasma membrane	62.39	58.51
Bra032034.1-P	Field mustard	nucleus, plasma membrane	64.16	58.23
CDX75209	Canola	nucleus	57.96	56.96
Bra011312.1-P	Field mustard	nucleus	57.96	56.96
VIT_18s0001g12090.t01	Wine grape	mitochondrion	50.88	46.56
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	43.81	46.26
CDX68806	Canola	nucleus	62.39	45.48
VIT_18s0072g01100.t01	Wine grape	cytosol	20.8	34.06
VIT_03s0063g02130.t01	Wine grape	mitochondrion	50.44	34.03
VIT_16s0050g01050.t01	Wine grape	cytosol	29.65	27.57
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	62.39	25.73
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	61.95	25.55

Protein Annotations

EntrezGene:100268022	wikigene:100268022	MapMan:19.4.1.7	Gene3D:3.90.1720.30	MEROPS:C97.A06	ProteinID:CCB46831
ProteinID:CCB46831.1	ncoils:Coil	UniProt:F6H3J6	EMBL:FN595231	EntrezGene:LOC100268022	wikigene:LOC100268022
PFAM:PF05903	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	SMART:SM01179	UniParc:UPI00015C885C
ArrayExpress:VIT_04s0008g05960	EnsemblPlantsGene:VIT_04s0008g05960	EnsemblPlants:VIT_04s0008g05960.t01	unigene:Vvi.1483	RefSeq:XP_002285347	RefSeq:XP_002285347.2
RefSeq:XP_010648702.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:5652975..5655893

Molecular Weight (calculated)

25439.7 Da

IEP (calculated)

10.186

GRAVY (calculated)

-0.473

Length

226 amino acids

Sequence
(BLAST)

001: MLCRMMSRKR KTGSVPVYLN VYDLTPMNGY AYWLGLGIYH SGVQVHGVEY AFGAHEHPTT GIFEVEPKQC PGFTFRKSIL IGRTDLGPKD VRSFMEKLAE
101: EYSGNTYNLI TRNCNHFCND VCNRLTGKPI PRWVNRLARL GFLCNCVLPV SLNETKVRQV RSEDRVCQGE KKKLRSHSSR FVSSSNTPPS LSPHSSGSAN
201: RSCRQKRCLP PSSSLIHKSS PSTLKL

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.