Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002750 | Potato | cytosol | 74.3 | 70.98 |
| Solyc12g006880.1.1 | Tomato | cytosol | 73.83 | 70.54 |
| KRH03735 | Soybean | nucleus | 73.36 | 69.78 |
| GSMUA_Achr5P06500_001 | Banana | cytosol, extracellular, peroxisome | 67.29 | 66.98 |
| KRH63012 | Soybean | nucleus | 70.56 | 65.65 |
| KRH54877 | Soybean | cytosol, peroxisome | 57.94 | 65.61 |
| GSMUA_Achr2P19400_001 | Banana | plastid | 63.08 | 62.21 |
| TraesCS7B01G270200.1 | Wheat | cytosol | 55.61 | 57.77 |
| TraesCS7A01G357600.1 | Wheat | cytosol | 55.14 | 57.28 |
| TraesCS7D01G365100.1 | Wheat | cytosol | 54.67 | 56.8 |
| Os06t0560400-01 | Rice | cytosol | 55.14 | 54.63 |
| EER89945 | Sorghum | cytosol | 53.74 | 54.5 |
| Zm00001d046249_P001 | Maize | cytosol | 52.8 | 53.55 |
| VIT_04s0008g05960.t01 | Wine grape | mitochondrion | 46.26 | 43.81 |
| VIT_18s0001g12090.t01 | Wine grape | mitochondrion | 45.79 | 39.68 |
| VIT_09s0002g08960.t01 | Wine grape | plasma membrane | 39.25 | 36.68 |
| VIT_03s0063g02130.t01 | Wine grape | mitochondrion | 48.6 | 31.04 |
| VIT_18s0072g01100.t01 | Wine grape | cytosol | 17.29 | 26.81 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 26.17 | 23.05 |
Protein Annotations
| EntrezGene:100252589 | wikigene:100252589 | MapMan:19.4.1.7 | Gene3D:3.90.1720.30 | ProteinID:CBI28160 | ProteinID:CBI28160.3 |
| UniProt:D7TBX5 | EMBL:FN595756 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100252589 |
| wikigene:LOC100252589 | PFAM:PF05903 | InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF13 | SMART:SM01179 |
| TIGR:TC52161 | UniParc:UPI00015C8B52 | ArrayExpress:VIT_11s0016g04860 | EnsemblPlantsGene:VIT_11s0016g04860 | EnsemblPlants:VIT_11s0016g04860.t01 | unigene:Vvi.9373 |
| unigene:Vvi.971 | RefSeq:XP_002285036 | RefSeq:XP_002285036.1 | : | : | : |
Description
No Description!
Coordinates
chr11:-:4178729..4183633
Molecular Weight (calculated)
23886.9 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.342
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAANTSISG SEYETQVILN VYDLTPLNNY IYWFGCGIFH SGIEVHGKEY GFGAHDFPAS GVFEVEPRSC PGFIYRNSII LGRIKMPPSE FRSFIENVAA
101: EYHGDTYHLI SKNCNHFTDD ICWRLTGKRI PGWVNRLARL GALCSCLLPE SLQVTTVKQL PEYHNCSEEE GSESVSTATP HDPTESDDAD QDKLHLISQC
201: AGSEELSFVK EAQR
101: EYHGDTYHLI SKNCNHFTDD ICWRLTGKRI PGWVNRLARL GALCSCLLPE SLQVTTVKQL PEYHNCSEEE GSESVSTATP HDPTESDDAD QDKLHLISQC
201: AGSEELSFVK EAQR
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
Arabidopsis Description
DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.