Factsheet for VIT_18s0001g12090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05795	Soybean	mitochondrion	84.21	82.87
KRH15239	Soybean	mitochondrion	83.81	82.47
Solyc12g089060.1.1	Tomato	mitochondrion	78.54	78.54
PGSC0003DMT400039949	Potato	mitochondrion	78.54	78.54
KRH38144	Soybean	mitochondrion	65.99	75.81
Solyc04g080030.2.1	Tomato	mitochondrion	73.68	74.9
Zm00001d028130_P001	Maize	mitochondrion	74.09	73.2
GSMUA_Achr7P25980_001	Banana	mitochondrion	61.54	73.08
EER95329	Sorghum	mitochondrion	73.28	71.83
Os03t0198500-01	Rice	mitochondrion	71.66	71.66
CDY10616	Canola	cytosol, nucleus, peroxisome	72.47	71.31
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	66.4	71.3
Zm00001d048173_P001	Maize	mitochondrion	72.87	71.15
TraesCS4B01G261700.1	Wheat	mitochondrion	71.26	70.97
TraesCS4A01G040500.1	Wheat	mitochondrion	71.26	70.97
TraesCS4D01G261500.1	Wheat	mitochondrion	70.85	70.56
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	72.87	69.77
PGSC0003DMT400071605	Potato	mitochondrion	75.71	65.61
AT1G47740.3	Thale cress	nucleus	74.09	65.59
KXG39054	Sorghum	plastid	65.18	64.92
CDY25677	Canola	nucleus	70.04	64.31
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	42.91	64.24
Bra032229.1-P	Field mustard	nucleus	72.47	64.16
CDY17002	Canola	nucleus	72.87	64.06
CDY23657	Canola	nucleus	72.47	63.93
Bra014091.1-P	Field mustard	nucleus	72.47	63.7
CDY17812	Canola	nucleus	72.47	63.7
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	63.56	60.38
VIT_03s0063g02130.t01	Wine grape	mitochondrion	78.54	57.91
HORVU4Hr1G070620.3	Barley	cytosol, nucleus, plastid	72.06	53.94
VIT_04s0008g05960.t01	Wine grape	mitochondrion	46.56	50.88
VIT_18s0072g01100.t01	Wine grape	cytosol	27.94	50.0
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	39.68	45.79
VIT_09s0002g08960.t01	Wine grape	plasma membrane	41.3	44.54
VIT_16s0050g01050.t01	Wine grape	cytosol	23.08	23.46

Protein Annotations

EntrezGene:100245551	wikigene:100245551	MapMan:19.4.1.7	Gene3D:3.90.1720.30	MEROPS:C97.A09	ProteinID:CBI19657
ProteinID:CBI19657.3	UniProt:E0CQ11	EMBL:FN595227	EntrezGene:LOC100245551	wikigene:LOC100245551	PFAM:PF05903
InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF37	SMART:SM01179	UniParc:UPI00015C8057	ArrayExpress:VIT_18s0001g12090
EnsemblPlantsGene:VIT_18s0001g12090	EnsemblPlants:VIT_18s0001g12090.t01	unigene:Vvi.1005	RefSeq:XP_002283278	RefSeq:XP_002283278.1	RefSeq:XP_010664659.1

Description

No Description!

Coordinates

chr18:-:10288371..10294959

Molecular Weight (calculated)

28144.2 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.357

Length

247 amino acids

Sequence
(BLAST)

001: MKLGLKKGWK SIVPLRLRGK SATRFCIFPK VKSAGYGPGN TPVYLNVYDL TPMNGYVYWA GLGIFHSGVE VHGVEYAFGA HDYPTSGVFE VEPRQCPGFK
101: FRKSILVGTT CLDPIQVREF MERHSASYNG DTYHLIVKNC NHFCKDICYK LTGRPIPKWV NRLAKIGSIC NCILPEALKI SAVRHDPNYQ EYDSEKRRLR
201: SAFNCLSSIS MRQRQLSTSS MFLHSPLKGC LPPWELRRST NRSLKDR

Best Arabidopsis Sequence Match ( AT1G47740.3 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.