CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032034.1-P	Field mustard	nucleus, plasma membrane	98.34	95.18
CDY35370	Canola	nucleus, plasma membrane	96.27	94.31
CDX76766	Canola	nucleus	83.82	85.59
AT2G25190.1	Thale cress	nucleus, vacuole	82.57	82.92
VIT_04s0008g05960.t01	Wine grape	mitochondrion	58.51	62.39
KRH05264	Soybean	cytosol, mitochondrion	54.77	61.11
KRH15787	Soybean	mitochondrion	53.53	60.0
CDY07077	Canola	cytosol, mitochondrion	54.36	59.55
CDX75209	Canola	nucleus	56.43	59.13
CDX88162	Canola	cytosol, mitochondrion	53.94	59.09
CDY65539	Canola	cytosol, mitochondrion	53.94	59.09
CDY65538	Canola	cytosol, mitochondrion	53.94	59.09
CDY05475	Canola	mitochondrion	52.7	58.8
CDY05376	Canola	cytosol, mitochondrion	51.87	57.87
KRH61696	Soybean	cytosol	51.45	57.14
KRH52364	Soybean	mitochondrion	52.28	56.25
CDY39951	Canola	cytosol	48.55	51.32
CDX67961	Canola	cytosol	47.72	50.44
CDX87334	Canola	cytosol	48.55	50.43
CDX79359	Canola	cytosol	46.89	49.56
CDX68806	Canola	nucleus	61.0	47.42
CDY09624	Canola	cytosol	39.83	44.65
CDX90471	Canola	cytosol	39.42	44.39
CDY27921	Canola	cytosol	37.34	40.54
CDX76571	Canola	cytosol	37.76	40.27
CDY64684	Canola	cytosol	38.17	37.86
CDX77757	Canola	cytosol	38.17	37.86
CDY10616	Canola	cytosol, nucleus, peroxisome	39.42	37.85
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	82.16	36.13
CDY25677	Canola	nucleus	39.42	35.32
CDY17812	Canola	nucleus	40.66	34.88
CDY17002	Canola	nucleus	39.83	34.16
CDY23657	Canola	nucleus	39.42	33.93
CDX89404	Canola	cytosol	23.65	23.27
CDY49480	Canola	cytosol	24.07	22.92
CDX94429	Canola	cytosol	23.24	22.86
CDY66007	Canola	cytosol	23.65	22.44
CDX94426	Canola	cytosol	23.24	22.22
CDX89402	Canola	cytosol	22.41	21.51

Protein Annotations

EnsemblPlants:CDY62507	EnsemblPlantsGene:GSBRNA2T00036350001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A08	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903
ProteinID:CDY62507	ProteinID:CDY62507.1	SEG:seg	SMART:SM01179	UniParc:UPI0004EE4DA8	UniProt:A0A078JA06
MapMan:19.4.1.7	:	:	:	:	:

Description

BnaC04g56370DBnaC04g56370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA06]

Coordinates

chrLK034154:-:22023..23782

Molecular Weight (calculated)

26972.3 Da

IEP (calculated)

10.536

GRAVY (calculated)

-0.622

Length

241 amino acids

Sequence
(BLAST)

001: MLCWKGSSVR RKEKTALLPV YLNVYDLTPM NAYGYWLGLG VFHSGVEVHG VEYAFGAHEA PSTGIFEVEP KKCPGFTFRK SILVGKTDMA AKEVRVFMEK
101: LAEEYRGNKY NLISRNCNHF CNEVCVKLTQ KPIPRWVNRL ARLGVLCNCV LPPRFNETKV RRVVQGELSE EERKKRRNRS RSGPLLSTSS SSSTPDSHRS
201: HIRAKSTGNN PTSSTSSSTS GSKKSKKQSP DQKSPSVSVK T

Best Arabidopsis Sequence Match ( AT2G25190.1 )
(BLAST)

001: MLCFKGSVKR KKQSGSVPVY LNVYDLTPMN AYGYWLGLGV FHSGVEVHGV EYAFGAHESS STGIFEVEPK KCPGFTFRKS ILVGKTDLVA KEVRVFMEKL
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O81728]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.