Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89402 | Canola | cytosol | 96.43 | 96.81 |
| CDY66007 | Canola | cytosol | 87.7 | 87.01 |
| CDY49480 | Canola | cytosol | 86.51 | 86.17 |
| AT4G25680.1 | Thale cress | cytosol | 85.71 | 85.71 |
| AT4G25660.1 | Thale cress | cytosol | 84.52 | 83.53 |
| CDX89404 | Canola | cytosol | 78.97 | 81.22 |
| CDX94429 | Canola | cytosol | 77.78 | 80.0 |
| KRH08874 | Soybean | cytosol | 69.44 | 71.43 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 68.65 | 71.19 |
| KRH38387 | Soybean | cytosol | 68.65 | 69.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.92 | 60.89 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 50.79 | 53.33 |
| Zm00001d045580_P001 | Maize | cytosol | 55.56 | 52.24 |
| EER87703 | Sorghum | cytosol | 55.16 | 51.87 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 53.17 | 49.63 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 38.1 | 48.73 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 55.16 | 47.28 |
| TraesCSU01G065800.1 | Wheat | cytosol | 54.37 | 46.28 |
| PGSC0003DMT400018924 | Potato | cytosol | 38.49 | 45.75 |
| Solyc02g082060.1.1 | Tomato | cytosol | 38.1 | 45.07 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 54.76 | 42.46 |
| CDY65538 | Canola | cytosol, mitochondrion | 23.81 | 27.27 |
| CDY65539 | Canola | cytosol, mitochondrion | 23.81 | 27.27 |
| CDX88162 | Canola | cytosol, mitochondrion | 23.81 | 27.27 |
| CDY39951 | Canola | cytosol | 24.6 | 27.19 |
| CDY07077 | Canola | cytosol, mitochondrion | 23.41 | 26.82 |
| CDY05376 | Canola | cytosol, mitochondrion | 22.62 | 26.39 |
| CDX87334 | Canola | cytosol | 24.21 | 26.29 |
| CDY05475 | Canola | mitochondrion | 22.22 | 25.93 |
| CDX79359 | Canola | cytosol | 22.22 | 24.56 |
| CDX67961 | Canola | cytosol | 22.22 | 24.56 |
| CDX75209 | Canola | nucleus | 22.22 | 24.35 |
| CDX76766 | Canola | nucleus | 22.22 | 23.73 |
| CDX90471 | Canola | cytosol | 19.84 | 23.36 |
| CDY09624 | Canola | cytosol | 19.84 | 23.26 |
| CDY62507 | Canola | nucleus, plasma membrane | 22.22 | 23.24 |
| CDY35370 | Canola | nucleus, plasma membrane | 22.62 | 23.17 |
| CDY27921 | Canola | cytosol | 19.84 | 22.52 |
| CDX76571 | Canola | cytosol | 19.84 | 22.12 |
| CDX77757 | Canola | cytosol | 20.63 | 21.4 |
| CDY64684 | Canola | cytosol | 20.63 | 21.4 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 20.24 | 20.32 |
| CDY17002 | Canola | nucleus | 21.83 | 19.57 |
| CDY25677 | Canola | nucleus | 20.24 | 18.96 |
| CDY17812 | Canola | nucleus | 21.03 | 18.86 |
| CDX68806 | Canola | nucleus | 23.02 | 18.71 |
| CDY23657 | Canola | nucleus | 20.24 | 18.21 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 22.62 | 10.4 |
Protein Annotations
| EnsemblPlants:CDX94426 | EnsemblPlantsGene:GSBRNA2T00157570001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:CDX94426 |
| ProteinID:CDX94426.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EE32F4 | MapMan:19.4.1.7 | : |
Description
BnaC01g17580D
Coordinates
chrLK031881:-:1109611..1111137
Molecular Weight (calculated)
27889.6 Da
IEP (calculated)
7.085
GRAVY (calculated)
-0.502
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEVVLHIYD VTNSGSEKTN NTILQINRFF KDGIGLGGIF HSAIQVYGDE EWSYGFCEQG TGVFSCPSSK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHSYDL LSKNCNHFCD VLCDVLGVPK LPGWVNRFAH AGDTALEVAG NTAMRIKQAK TEIVSASKVA YRFLSNVTSN VTNGSSNGLQ QRPGTLTNSE
201: NGNSRLQGSW FKGLLNTSKP STSTEIDNKD DDENQQRKQS RDSAPLNHSA FG
101: REWPGHSYDL LSKNCNHFCD VLCDVLGVPK LPGWVNRFAH AGDTALEVAG NTAMRIKQAK TEIVSASKVA YRFLSNVTSN VTNGSSNGLQ QRPGTLTNSE
201: NGNSRLQGSW FKGLLNTSKP STSTEIDNKD DDENQQRKQS RDSAPLNHSA FG
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.