CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81033
CDX84035
CDX96860
CDX97509
CDY02487
CDY08216
CDY17034
CDY23634
CDY23649
CDY26148
CDY33093
CDY37483
CDY47592
CDY49093
CDY51405
CDY51735
CDY58876
CDY61477
CDY62016
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	CDX84035	AT1G14340.1	21798944
AT1G71480.1	CDX96860	AT1G14340.1	21798944
AT1G71480.1	CDY49093	AT1G14340.1	21798944
AT1G71480.1	CDY62016	AT1G14340.1	21798944
AT1G71480.1	CDY17034	AT1G47260.1	21798944
AT1G71480.1	CDY23649	AT1G47260.1	21798944
AT1G71480.1	CDY47592	AT1G47260.1	21798944
AT1G71480.1	CDY67628	AT1G47260.1	21798944
AT1G71480.1	CDY02487	AT1G54060.1	21798944
AT1G71480.1	CDY08216	AT1G54060.1	21798944
AT1G71480.1	CDY26148	AT1G54060.1	21798944
AT1G71480.1	CDY33093	AT1G54060.1	21798944
AT1G71480.1	CDY51405	AT1G54060.1	21798944
AT1G71480.1	CDY61477	AT1G54060.1	21798944
AT1G71480.1	CDX97509	AT3G13710.1	21798944
AT1G71480.1	CDY23634	AT3G13710.1	21798944
AT1G71480.1	CDY37483	AT3G13710.1	21798944
AT1G71480.1	CDY51735	AT3G13710.1	21798944
AT1G71480.1	CDX81033	AT5G07110.1	21798944
AT1G71480.1	CDY58876	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68309	Canola	plastid	94.12	91.0
AT1G71480.1	Thale cress	plastid	68.14	64.35
CDX72810	Canola	plastid	68.14	58.16
KXG40432	Sorghum	peroxisome	39.22	51.95
Solyc11g042620.1.1	Tomato	plastid	52.45	47.14
KRH77740	Soybean	cytosol	46.08	45.85
TraesCSU01G023200.1	Wheat	plastid	45.59	45.15
HORVU4Hr1G032500.2	Barley	cytosol	13.73	44.44
TraesCS2A01G046200.1	Wheat	mitochondrion	42.65	43.72
TraesCS2B01G058300.1	Wheat	mitochondrion	43.63	43.63
KRH27793	Soybean	plastid	48.04	43.17
KXG32164	Sorghum	plastid	43.63	41.01
GSMUA_Achr10P...	Banana	plastid	45.59	40.79
Zm00001d040242_P001	Maize	plastid	43.14	39.11
VIT_18s0001g05960.t01	Wine grape	plastid	50.0	39.08
HORVU2Hr1G007080.13	Barley	cytosol	44.61	37.14
Os09t0266000-02	Rice	plastid	39.71	24.47
CDY35038	Canola	plastid	25.0	18.28
CDX67496	Canola	plastid	25.0	18.28

Protein Annotations

EnsemblPlants:CDY36691	EnsemblPlantsGene:GSBRNA2T00062465001	Gene3D:3.10.450.50	GO:A0A078HG09	InterPro:NTF2	InterPro:NTF2-like_dom_sf
PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	PFAM:PF02136	ProteinID:CDY36691	ProteinID:CDY36691.1	SEG:seg
SUPFAM:SSF54427	UniParc:UPI0004EEABFF	UniProt:A0A078HG09	MapMan:35.2	:	:

Description

BnaCnng07930DBnaCnng07930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG09]

Coordinates

chrLK032381:-:336393..338328

Molecular Weight (calculated)

22524.2 Da

IEP (calculated)

8.792

GRAVY (calculated)

0.162

Length

204 amino acids

Sequence
(BLAST)

001: MSVTPSLISS LRSYSLLGTK VVTPRSVVLQ RRLLSTSYVP ATKAALPSSA NDVVPKTPAS EIVSIFYTAI NVNDLASARD LIAQDCVYED LIFSSPFVGR
101: TAILDFFGKF IDATSTDMQF VIDDISKEDS SAVGVSWHLE WKGKRFPFSK SCSFYRLEVI DGKKQIVYVR DCVEPAIKPG ESVIAAVKGV AWLLRKFPQI
201: ADRF

Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.