CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028497.1-P	Field mustard	plastid	96.42	96.42
CDY35038	Canola	plastid	95.7	95.7
AT5G41470.1	Thale cress	plastid	73.48	74.01
KRH77576	Soybean	plastid	36.56	35.79
Solyc12g056190.1.1	Tomato	plastid	29.39	30.15
Solyc08g081450.2.1	Tomato	plastid	27.96	30.12
Zm00001d034934_P001	Maize	plastid	29.03	30.0
PGSC0003DMT400032107	Potato	plastid	32.26	28.48
TraesCS5D01G562900.1	Wheat	plastid	24.01	25.87
TraesCS5B01G571800.1	Wheat	plastid	26.16	25.8
CDY36691	Canola	plastid	18.28	25.0
KXG37063	Sorghum	plastid	20.43	24.46
TraesCS5D01G562700.1	Wheat	plastid	25.81	24.24
TraesCS7B01G001100.1	Wheat	plastid	25.81	24.16
CDX68309	Canola	plastid	17.92	23.7
TraesCS5D01G562800.1	Wheat	plastid	24.37	23.61
TraesCS5B01G571900.1	Wheat	plastid	24.37	23.45
TraesCS5B01G571700.1	Wheat	plastid	25.81	23.23
TraesCS7B01G001000.1	Wheat	plastid	23.66	22.92
CDX72810	Canola	plastid	19.35	22.59
TraesCS6B01G336600.1	Wheat	plastid	12.54	13.46

Protein Annotations

EnsemblPlants:CDX67496	EnsemblPlantsGene:GSBRNA2T00098610001	Gene3D:3.10.450.50	GO:A0A078BS75	InterPro:NTF2-like_dom_sf	InterPro:SnoaL-like
PANTHER:PTHR33698	PANTHER:PTHR33698:SF1	PFAM:PF12680	ProteinID:CDX67496	ProteinID:CDX67496.1	SUPFAM:SSF54427
TMHMM:TMhelix	UniParc:UPI0004EE4F71	MapMan:35.2	:	:	:

Description

BnaA07g15360D

Coordinates

chrLK031787:+:575159..576630

Molecular Weight (calculated)

32016.3 Da

IEP (calculated)

9.332

GRAVY (calculated)

0.014

Length

279 amino acids

Sequence
(BLAST)

001: MASMVNIMSP VVSKNLITNF KAFRLKPDLP SLQHTRVNAI KNGPIKMMKK YGSRRSIVVS CLDQPISMPN QLSGYDAVMK FYSSINEKNQ DQLRNCISND
101: CFVDDFSFSK PFHGEKEAMK FFEELVNSMG QNVKFCVENV CEGDGYNAAV NWHIEWKGRK IPFTRGCSFY EFTDEGGILV IRNARILIES PIKPGGIALT
201: LLKNITFLFD EFPQVADWFL GKPYEIIQLT LRIYGLFLAP FIGHVIASYL KLLNNMTEFF LLILNIIIKT QSLFFKWKK

Best Arabidopsis Sequence Match ( AT5G41470.1 )
(BLAST)

001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.