Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G001000.1 | Wheat | plastid | 97.22 | 97.22 |
| TraesCS5D01G562700.1 | Wheat | plastid | 55.9 | 54.21 |
| TraesCS5D01G562900.1 | Wheat | plastid | 46.53 | 51.74 |
| Zm00001d034934_P001 | Maize | plastid | 47.92 | 51.11 |
| KXG37063 | Sorghum | plastid | 31.94 | 39.48 |
| AT5G41470.1 | Thale cress | plastid | 26.39 | 27.44 |
| CDY35038 | Canola | plastid | 24.31 | 25.09 |
| Bra028497.1-P | Field mustard | plastid | 23.96 | 24.73 |
| CDX67496 | Canola | plastid | 23.61 | 24.37 |
| Solyc08g081450.2.1 | Tomato | plastid | 20.49 | 22.78 |
| KRH77576 | Soybean | plastid | 22.22 | 22.46 |
| Solyc12g056190.1.1 | Tomato | plastid | 20.83 | 22.06 |
| PGSC0003DMT400032107 | Potato | plastid | 22.92 | 20.89 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G562800.1 | EnsemblPlantsGene:TraesCS5D01G562800 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF1 |
| SUPFAM:SSF54427 | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:562345338..562346798
Molecular Weight (calculated)
32955.3 Da
IEP (calculated)
9.939
GRAVY (calculated)
-0.055
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSPLSACKH PNTMNSALTH ISFHSPSYFI LKQRPQSRHQ HISIKWRKRQ QCSAKPIRAI PGPNATGAYR GGNALPSSPL TDVIQEFYSS LNDKDITRLN
101: KLISPDCVIE DTAYYKPLDV KNTHTYFTRL IKVMGKNAKF AIDEVCQGVE PTVAVMWHLE WRGEMIPFAK GCSFFMCSAN GAALLIRKVH IFDESPLKPG
201: KLALEILNFV TNVFDTFPYI AKGFLKNKEA LARFFARFYK FCGPFIVPLV AYYTDVPILA YYTRFWSYVA QGFTMVLNML YNIFKRFM
101: KLISPDCVIE DTAYYKPLDV KNTHTYFTRL IKVMGKNAKF AIDEVCQGVE PTVAVMWHLE WRGEMIPFAK GCSFFMCSAN GAALLIRKVH IFDESPLKPG
201: KLALEILNFV TNVFDTFPYI AKGFLKNKEA LARFFARFYK FCGPFIVPLV AYYTDVPILA YYTRFWSYVA QGFTMVLNML YNIFKRFM
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.