Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028497.1-P | Field mustard | plastid | 74.73 | 74.19 |
| CDY35038 | Canola | plastid | 74.73 | 74.19 |
| CDX67496 | Canola | plastid | 74.01 | 73.48 |
| KRH77576 | Soybean | plastid | 35.38 | 34.39 |
| Zm00001d034934_P001 | Maize | plastid | 29.96 | 30.74 |
| Solyc12g056190.1.1 | Tomato | plastid | 29.96 | 30.51 |
| TraesCS5D01G562900.1 | Wheat | plastid | 25.63 | 27.41 |
| Solyc08g081450.2.1 | Tomato | plastid | 25.27 | 27.03 |
| TraesCS5B01G571800.1 | Wheat | plastid | 27.44 | 26.86 |
| TraesCS7B01G001100.1 | Wheat | plastid | 28.88 | 26.85 |
| TraesCS5D01G562700.1 | Wheat | plastid | 28.52 | 26.6 |
| PGSC0003DMT400032107 | Potato | plastid | 30.32 | 26.58 |
| TraesCS5D01G562800.1 | Wheat | plastid | 27.44 | 26.39 |
| TraesCS7B01G001000.1 | Wheat | plastid | 26.71 | 25.69 |
| TraesCS5B01G571700.1 | Wheat | plastid | 28.52 | 25.48 |
| AT1G71480.1 | Thale cress | plastid | 19.49 | 25.0 |
| TraesCS5B01G571900.1 | Wheat | plastid | 24.91 | 23.79 |
| KXG37063 | Sorghum | plastid | 19.86 | 23.61 |
| TraesCS6B01G336600.1 | Wheat | plastid | 11.19 | 11.92 |
Protein Annotations
| Gene3D:3.10.450.50 | MapMan:35.2 | EntrezGene:834148 | ProteinID:AED94682.1 | ArrayExpress:AT5G41470 | EnsemblPlantsGene:AT5G41470 |
| RefSeq:AT5G41470 | TAIR:AT5G41470 | RefSeq:AT5G41470-TAIR-G | EnsemblPlants:AT5G41470.1 | TAIR:AT5G41470.1 | UniProt:F4JYE8 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_198962.2 | InterPro:NTF2-like_dom_sf |
| PFAM:PF12680 | PO:PO:0000005 | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF1 | SUPFAM:SSF54427 | InterPro:SnoaL-like |
| UniParc:UPI000150585C | SEG:seg | : | : | : | : |
Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
Coordinates
chr5:+:16593841..16595568
Molecular Weight (calculated)
31621.8 Da
IEP (calculated)
9.673
GRAVY (calculated)
0.014
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.