Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G571900.1 | Wheat | plastid | 38.46 | 34.48 |
| TraesCS5D01G562900.1 | Wheat | plastid | 28.46 | 28.57 |
| TraesCS5B01G571700.1 | Wheat | plastid | 25.77 | 21.61 |
| TraesCS7B01G001000.1 | Wheat | plastid | 23.46 | 21.18 |
| TraesCS5B01G571800.1 | Wheat | plastid | 22.69 | 20.85 |
| TraesCS7B01G001100.1 | Wheat | plastid | 23.85 | 20.81 |
| KXG37063 | Sorghum | plastid | 16.54 | 18.45 |
| Zm00001d034934_P001 | Maize | plastid | 18.46 | 17.78 |
| Solyc12g056190.1.1 | Tomato | plastid | 13.46 | 12.87 |
| CDY35038 | Canola | plastid | 13.46 | 12.54 |
| CDX67496 | Canola | plastid | 13.46 | 12.54 |
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 9.62 | 12.25 |
| Bra028497.1-P | Field mustard | plastid | 13.08 | 12.19 |
| Solyc08g081450.2.1 | Tomato | plastid | 11.92 | 11.97 |
| AT5G41470.1 | Thale cress | plastid | 11.92 | 11.19 |
| PGSC0003DMT400032107 | Potato | plastid | 11.92 | 9.81 |
| KRH77576 | Soybean | plastid | 9.62 | 8.77 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G336600.1 | EnsemblPlantsGene:TraesCS6B01G336600 | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF1 | SignalP:SignalP-noTM | MapMan:35.2 |
Description
No Description!
Coordinates
chr6B:-:592467269..592468051
Molecular Weight (calculated)
28611.7 Da
IEP (calculated)
10.348
GRAVY (calculated)
-0.302
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTNAAISHL IPLCLGHLSA FIKHPDAMIS ALTLVSFQSP SLNPKQRLLS RRHKISAKWG KSQQCSPKPI RSIPGPKATS CGLNKAFHGD GVNALPSSPL
101: TDVIHELYSS LNDKDIARLM ELIDPDCTVE HTSYYKPLNF KVILSSAPIS LQHHRTSLSR QVNSKKEVAE EVNRASITNK LQKFSKSTAQ PALAYCTAGL
201: VRHVTIDGRQ IVACAPAIFK EKAMNCTKEA LNRKLCKTLS NRTANTWPEE LQQRASRAAL
101: TDVIHELYSS LNDKDIARLM ELIDPDCTVE HTSYYKPLNF KVILSSAPIS LQHHRTSLSR QVNSKKEVAE EVNRASITNK LQKFSKSTAQ PALAYCTAGL
201: VRHVTIDGRQ IVACAPAIFK EKAMNCTKEA LNRKLCKTLS NRTANTWPEE LQQRASRAAL
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.