Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G562700.1 | Wheat | plastid | 91.61 | 95.62 |
| TraesCS7B01G001100.1 | Wheat | plastid | 84.84 | 88.25 |
| TraesCS7B01G001000.1 | Wheat | plastid | 52.58 | 56.6 |
| TraesCS5B01G571900.1 | Wheat | plastid | 50.97 | 54.48 |
| Zm00001d034934_P001 | Maize | plastid | 42.9 | 49.26 |
| TraesCS5B01G571800.1 | Wheat | plastid | 44.84 | 49.12 |
| KXG37063 | Sorghum | plastid | 29.68 | 39.48 |
| AT5G41470.1 | Thale cress | plastid | 25.48 | 28.52 |
| Bra028497.1-P | Field mustard | plastid | 23.87 | 26.52 |
| CDY35038 | Canola | plastid | 23.55 | 26.16 |
| CDX67496 | Canola | plastid | 23.23 | 25.81 |
| TraesCS6B01G336600.1 | Wheat | plastid | 21.61 | 25.77 |
| KRH77576 | Soybean | plastid | 23.23 | 25.26 |
| Solyc08g081450.2.1 | Tomato | plastid | 19.68 | 23.55 |
| Solyc12g056190.1.1 | Tomato | plastid | 20.65 | 23.53 |
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 15.16 | 23.04 |
| PGSC0003DMT400032107 | Potato | plastid | 23.23 | 22.78 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G571700.1 | EnsemblPlantsGene:TraesCS5B01G571700 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF1 |
| SUPFAM:SSF54427 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:712855413..712856872
Molecular Weight (calculated)
35771.7 Da
IEP (calculated)
9.116
GRAVY (calculated)
0.015
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSHLSAFKH PNAMNSALTL VSFQSPSFNL KQRPLSQRQQ ISVEWGERQQ YSPKPRRAIP GPNATGGLNN ADRRGNTLPS SPMTHVIQEF CSSLNDKDIA
101: RLMELIDPDC TVKHTSYYKP LDIKDTIAYF ARLMEAMRKN VKFAIDEVCQ GVEPTVAAAI WHLEWNGKII PFTRGCSFYM CSAKGEALLI RKVHIFNESP
201: VKPVNLALDI LLFVTFLFDL LPKQAEDFLQ NPEALVQSCV KFYKFLLEPV IVYLLAYSIR FWSFVVKLYK LYLEPCIVYL LAYNFRFWSF VARRLDTVLD
301: VLYNIFKQFM
101: RLMELIDPDC TVKHTSYYKP LDIKDTIAYF ARLMEAMRKN VKFAIDEVCQ GVEPTVAAAI WHLEWNGKII PFTRGCSFYM CSAKGEALLI RKVHIFNESP
201: VKPVNLALDI LLFVTFLFDL LPKQAEDFLQ NPEALVQSCV KFYKFLLEPV IVYLLAYSIR FWSFVVKLYK LYLEPCIVYL LAYNFRFWSF VARRLDTVLD
301: VLYNIFKQFM
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.