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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35038 Canola plastid 97.13 97.13
CDX67496 Canola plastid 96.42 96.42
AT5G41470.1 Thale cress plastid 74.19 74.73
KRH77576 Soybean plastid 36.56 35.79
Solyc12g056190.1.1 Tomato plastid 30.11 30.88
Zm00001d034934_P001 Maize plastid 29.39 30.37
Solyc08g081450.2.1 Tomato plastid 27.24 29.34
PGSC0003DMT400032107 Potato plastid 31.54 27.85
TraesCS5D01G562900.1 Wheat plastid 24.73 26.64
TraesCS5B01G571800.1 Wheat plastid 26.52 26.15
TraesCS5D01G562700.1 Wheat plastid 26.52 24.92
KXG37063 Sorghum plastid 20.79 24.89
TraesCS7B01G001100.1 Wheat plastid 26.16 24.5
TraesCS5B01G571900.1 Wheat plastid 25.09 24.14
TraesCS5D01G562800.1 Wheat plastid 24.73 23.96
TraesCS5B01G571700.1 Wheat plastid 26.52 23.87
TraesCS7B01G001000.1 Wheat plastid 24.01 23.26
Bra003923.1-P Field mustard plastid 10.39 18.59
TraesCS6B01G336600.1 Wheat plastid 12.19 13.08
Protein Annotations
EnsemblPlants:Bra028497.1EnsemblPlants:Bra028497.1-PEnsemblPlantsGene:Bra028497Gene3D:3.10.450.50GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:NTF2-like_dom_sfInterPro:SnoaL-likencoils:CoilPANTHER:PTHR33698PANTHER:PTHR33698:SF1
PFAM:PF12680SUPFAM:SSF54427TMHMM:TMhelixUniParc:UPI000254338FUniProt:M4EI82MapMan:35.2
Description
AT5G41470 (E=1e-124) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein (TAIR:AT1G71480.1); Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Coordinates
chrA02:+:677159..678587
Molecular Weight (calculated)
32042.3 Da
IEP (calculated)
9.333
GRAVY (calculated)
0.008
Length
279 amino acids
Sequence
(BLAST)
001: MASMVNIMSP VVSKNLITNF KAFRLKHDLP SLQHTRVDAI NNGPIKMMKK YGSRRSIVVS CLDQPISMPN QLSGYDAVMK FYSSINEKNQ DQLRNCISND
101: CFVDDFSFSK PFHGKKEAMK FFEELVNSMG QNVKFCVENV CEGDGYNAAV NWHIEWKGRK IPFTRGCSFY EFTDEGGILV IRNARILIES PIKPGGIALT
201: LLKNITFLFD EFPQVADWFL GKPYEIIQLT LRIYGLFLAP FIGHVIASYL KLLNNMTEFF LLILNIIIKT QSLFFKWKK
Best Arabidopsis Sequence Match ( AT5G41470.1 )
(BLAST)
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.