Factsheet for Bra003923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005924.1-P
Bra014069.1-P
Bra014370.1-P
Bra016705.1-P
Bra019660.1-P
Bra021504.1-P
Bra027406.1-P
Bra030909.1-P
Bra032216.1-P
Bra037960.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	Bra016705.1-P	AT1G14340.1	21798944
AT1G71480.1	Bra019660.1-P	AT1G14340.1	21798944
AT1G71480.1	Bra014069.1-P	AT1G47260.1	21798944
AT1G71480.1	Bra032216.1-P	AT1G47260.1	21798944
AT1G71480.1	Bra014370.1-P	AT1G54060.1	21798944
AT1G71480.1	Bra030909.1-P	AT1G54060.1	21798944
AT1G71480.1	Bra037960.1-P	AT1G54060.1	21798944
AT1G71480.1	Bra021504.1-P	AT3G13710.1	21798944
AT1G71480.1	Bra027406.1-P	AT3G13710.1	21798944
AT1G71480.1	Bra005924.1-P	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68309	Canola	plastid	91.03	67.3
HORVU4Hr1G032500.2	Barley	cytosol	17.31	42.86
AT1G71480.1	Thale cress	plastid	56.41	40.74
KXG40432	Sorghum	peroxisome	30.77	31.17
TraesCSU01G023200.1	Wheat	plastid	37.82	28.64
Solyc11g042620.1.1	Tomato	plastid	41.67	28.63
GSMUA_Achr10P...	Banana	plastid	41.03	28.07
TraesCS2B01G058300.1	Wheat	mitochondrion	35.26	26.96
TraesCS2A01G046200.1	Wheat	mitochondrion	33.97	26.63
KRH77740	Soybean	cytosol	33.33	25.37
KXG32164	Sorghum	plastid	34.62	24.88
KRH27793	Soybean	plastid	35.9	24.67
Zm00001d040242_P001	Maize	plastid	35.26	24.44
VIT_18s0001g05960.t01	Wine grape	plastid	39.74	23.75
HORVU2Hr1G007080.13	Barley	cytosol	35.9	22.86
Os09t0266000-02	Rice	plastid	31.41	14.8
Bra028497.1-P	Field mustard	plastid	18.59	10.39

Protein Annotations

EnsemblPlants:Bra003923.1	EnsemblPlants:Bra003923.1-P	EnsemblPlantsGene:Bra003923	Gene3D:3.10.450.50	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	InterPro:NTF2	InterPro:NTF2-like_dom_sf	PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	PFAM:PF02136
SEG:seg	SUPFAM:SSF54427	UniParc:UPI0002541883	UniProt:M4CI90	MapMan:35.2	:

Description

AT1G71480 (E=7e-037) | nuclear transport factor 2 (NTF2) family protein

Coordinates

chrA07:-:15776005..15776557

Molecular Weight (calculated)

17006.4 Da

IEP (calculated)

9.423

GRAVY (calculated)

0.146

Length

156 amino acids

Sequence
(BLAST)

001: MSVTTSLISS LRSSSLLGTK VVTPRSVVLS RRLLSTSYVP ATKAALPSRA NNVVPKTPAY EIVSSFYTAI NSNDLSSARD LIAQDCVYED LIFSSPFVGR
101: TAILEFFGKF IDATSTDMQF VIDDISKEDS SAVGVSWHLG ELPKLTRKKF IIGYKA

Best Arabidopsis Sequence Match ( AT1G71480.2 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LG

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.