Factsheet for VIT_18s0001g05960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_09s0002g00720.t01
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT1G71480.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944
AT1G71480.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40432	Sorghum	peroxisome	35.63	60.39
Solyc11g042620.1.1	Tomato	plastid	47.89	55.07
AT1G71480.1	Thale cress	plastid	44.06	53.24
KRH27793	Soybean	plastid	45.98	52.86
KRH77740	Soybean	cytosol	41.38	52.68
CDY36691	Canola	plastid	39.08	50.0
TraesCS2A01G046200.1	Wheat	mitochondrion	37.16	48.74
KXG32164	Sorghum	plastid	39.46	47.47
CDX68309	Canola	plastid	38.31	47.39
CDX72810	Canola	plastid	43.3	47.28
TraesCS2B01G058300.1	Wheat	mitochondrion	36.4	46.57
TraesCSU01G023200.1	Wheat	plastid	36.4	46.12
Zm00001d040242_P001	Maize	plastid	38.31	44.44
GSMUA_Achr10P...	Banana	plastid	36.78	42.11
HORVU4Hr1G032500.2	Barley	cytosol	9.96	41.27
Bra003923.1-P	Field mustard	plastid	23.75	39.74
HORVU2Hr1G007080.13	Barley	cytosol	36.4	38.78
Os09t0266000-02	Rice	plastid	39.85	31.42

Protein Annotations

EntrezGene:100243104	wikigene:100243104	Gene3D:3.10.450.50	MapMan:35.2	ProteinID:CCB56089	ProteinID:CCB56089.1
UniProt:F6HN34	EMBL:FN595996	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	EntrezGene:LOC100243104
wikigene:LOC100243104	InterPro:NTF2-like_dom_sf	PFAM:PF12680	PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	SUPFAM:SSF54427
InterPro:SnoaL-like	UniParc:UPI0002109112	ArrayExpress:VIT_18s0001g05960	EnsemblPlantsGene:VIT_18s0001g05960	EnsemblPlants:VIT_18s0001g05960.t01	RefSeq:XP_002275923
RefSeq:XP_002275923.1	RefSeq:XP_003634940	RefSeq:XP_003634940.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18_random:+:4564384..4570250

Molecular Weight (calculated)

29323.2 Da

IEP (calculated)

8.786

GRAVY (calculated)

-0.264

Length

261 amino acids

Sequence
(BLAST)

001: MSLLTNSTTL LRPSKLSPPL LHPHTASIAT HFTQRRSRRC NLLRVSSSPQ NPTATIAEPV TTTQSDEANG DGGDESILLS GSSVVRAFYA GINSHDLDSV
101: EELIAHNCVY EDLIFPQPFV GRKAIMDFFN KFIDTISMEL QFVIDDISEA DSSAVGVTWH LEWKGRPFPF SKGCSFYRLE VLNGKRQIIY GRDSVEPFFK
201: PGETALVAIR GVAWLLQRFP KLADCMQPNK VSSPPQKNKI KYKKNKFTQP CRCYMALTYI Q

Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.