Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G023200.1 | Wheat | plastid | 77.78 | 23.79 |
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 76.19 | 23.53 |
| TraesCS2A01G046200.1 | Wheat | mitochondrion | 71.43 | 22.61 |
| HORVU2Hr1G007080.13 | Barley | cytosol | 76.19 | 19.59 |
| KXG40432 | Sorghum | peroxisome | 46.03 | 18.83 |
| Bra003923.1-P | Field mustard | plastid | 42.86 | 17.31 |
| KXG32164 | Sorghum | plastid | 57.14 | 16.59 |
| GSMUA_Achr10P... | Banana | plastid | 53.97 | 14.91 |
| Zm00001d040242_P001 | Maize | plastid | 52.38 | 14.67 |
| Solyc11g042620.1.1 | Tomato | plastid | 52.38 | 14.54 |
| KRH77740 | Soybean | cytosol | 46.03 | 14.15 |
| CDY36691 | Canola | plastid | 44.44 | 13.73 |
| AT1G71480.1 | Thale cress | plastid | 44.44 | 12.96 |
| CDX68309 | Canola | plastid | 42.86 | 12.8 |
| KRH27793 | Soybean | plastid | 46.03 | 12.78 |
| Os09t0266000-02 | Rice | plastid | 57.14 | 10.88 |
| CDX72810 | Canola | plastid | 38.1 | 10.04 |
| VIT_18s0001g05960.t01 | Wine grape | plastid | 41.27 | 9.96 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G032500.2 | EnsemblPlantsGene:HORVU4Hr1G032500 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF3 |
| SUPFAM:SSF54427 | UniParc:UPI000B46B3C1 | UniProt:A0A287NQP2 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:223086132..223086965
Molecular Weight (calculated)
6631.9 Da
IEP (calculated)
4.844
GRAVY (calculated)
0.146
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MRSSSVAATA TDGSADMKGA AAAMVREFYS GVNRHDLAAV APLIAEACVY EDLIFPRPMV GRD
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LG
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LG
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.