Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG40432 | Sorghum | peroxisome | 54.22 | 79.22 |
| KXG32164 | Sorghum | plastid | 65.78 | 68.2 |
| TraesCS2A01G046200.1 | Wheat | mitochondrion | 59.11 | 66.83 |
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 58.67 | 64.71 |
| TraesCSU01G023200.1 | Wheat | plastid | 58.67 | 64.08 |
| HORVU4Hr1G032500.2 | Barley | cytosol | 14.67 | 52.38 |
| HORVU2Hr1G007080.13 | Barley | cytosol | 56.0 | 51.43 |
| KRH77740 | Soybean | cytosol | 43.56 | 47.8 |
| GSMUA_Achr10P... | Banana | plastid | 47.56 | 46.93 |
| Solyc11g042620.1.1 | Tomato | plastid | 47.11 | 46.7 |
| AT1G71480.1 | Thale cress | plastid | 43.11 | 44.91 |
| KRH27793 | Soybean | plastid | 44.0 | 43.61 |
| CDY36691 | Canola | plastid | 39.11 | 43.14 |
| CDX68309 | Canola | plastid | 38.22 | 40.76 |
| CDX72810 | Canola | plastid | 41.78 | 39.33 |
| VIT_18s0001g05960.t01 | Wine grape | plastid | 44.44 | 38.31 |
| Os09t0266000-02 | Rice | plastid | 55.56 | 37.76 |
| Bra003923.1-P | Field mustard | plastid | 24.44 | 35.26 |
| Zm00001d034934_P001 | Maize | plastid | 24.89 | 20.74 |
Protein Annotations
| EntrezGene:100273387 | Gene3D:3.10.450.50 | MapMan:35.2 | UniProt:B4FV63 | EMBL:BT041001 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0016020 | InterPro:NTF2-like_dom_sf | ProteinID:ONM30919.1 | PFAM:PF12680 | PANTHER:PTHR33698 |
| PANTHER:PTHR33698:SF3 | SUPFAM:SSF54427 | InterPro:SnoaL-like | UniParc:UPI00017B82A6 | EnsemblPlantsGene:Zm00001d040242 | EnsemblPlants:Zm00001d040242_P001 |
| EnsemblPlants:Zm00001d040242_T001 | SEG:seg | : | : | : | : |
Description
Nuclear transport factor 2 (NTF2) family protein
Coordinates
chr3:-:33401353..33402804
Molecular Weight (calculated)
24666.3 Da
IEP (calculated)
9.999
GRAVY (calculated)
-0.226
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLQHGPRPG VAGAARPRSS LPRRPSLPRR RRSSSSTTRT TRTALVVLVA AATRDGARKT TASASRATAA DVVRQFYDGV NRRDLAAVEP LIAEGCVYED
101: LVFPRPFVGR ERVVGFFGEF MGTISPDLQF VIDDISAEDS AAVGVTWHLE WRGRPFPFSR GCSFYRLLGS GSDSDADSDS EQQRLQIVYG RDCVEPAAKP
201: GDLALVIIRG VTWILERFPS LASRL
101: LVFPRPFVGR ERVVGFFGEF MGTISPDLQF VIDDISAEDS AAVGVTWHLE WRGRPFPFSR GCSFYRLLGS GSDSDADSDS EQQRLQIVYG RDCVEPAAKP
201: GDLALVIIRG VTWILERFPS LASRL
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.