Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 91.26 | 92.16 |
| TraesCS2A01G046200.1 | Wheat | mitochondrion | 86.89 | 89.95 |
| HORVU4Hr1G032500.2 | Barley | cytosol | 23.79 | 77.78 |
| KXG40432 | Sorghum | peroxisome | 51.46 | 68.83 |
| HORVU2Hr1G007080.13 | Barley | cytosol | 75.73 | 63.67 |
| Zm00001d040242_P001 | Maize | plastid | 64.08 | 58.67 |
| KXG32164 | Sorghum | plastid | 61.65 | 58.53 |
| Solyc11g042620.1.1 | Tomato | plastid | 51.94 | 47.14 |
| AT1G71480.1 | Thale cress | plastid | 49.03 | 46.76 |
| GSMUA_Achr10P... | Banana | plastid | 50.49 | 45.61 |
| CDY36691 | Canola | plastid | 45.15 | 45.59 |
| KRH77740 | Soybean | cytosol | 45.15 | 45.37 |
| KRH27793 | Soybean | plastid | 47.57 | 43.17 |
| CDX68309 | Canola | plastid | 44.17 | 43.13 |
| CDX72810 | Canola | plastid | 45.63 | 39.33 |
| Bra003923.1-P | Field mustard | plastid | 28.64 | 37.82 |
| Os09t0266000-02 | Rice | plastid | 60.19 | 37.46 |
| VIT_18s0001g05960.t01 | Wine grape | plastid | 46.12 | 36.4 |
Protein Annotations
| EnsemblPlants:TraesCSU01G023200.1 | EnsemblPlantsGene:TraesCSU01G023200 | Gene3D:3.10.450.50 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 |
| InterPro:NTF2-like_dom_sf | InterPro:SnoaL-like | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF3 | PFAM:PF12680 | SEG:seg |
| SUPFAM:SSF54427 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:24304096..24304986
Molecular Weight (calculated)
22412.0 Da
IEP (calculated)
8.967
GRAVY (calculated)
-0.109
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MALATQPPQL RVGIGAAPAA HRPPSPSIRA RGGGRRRTRS VSVAAAAAEG RAAVKGAAAE VVREFYEGVN RRDLAAVAPL IAEGCVYEDL VFPRPMVGRD
101: RVVGFFGEFM GSVSPDLRFV IDDISGEDPS AVGVTWHLEW KGRPFPFSRG CSFYRCEPDP QRPQQIQIVY GRDCVEPATK PGELALVVIR GVTWILERFP
201: SLADRL
101: RVVGFFGEFM GSVSPDLRFV IDDISGEDPS AVGVTWHLEW KGRPFPFSRG CSFYRCEPDP QRPQQIQIVY GRDCVEPATK PGELALVVIR GVTWILERFP
201: SLADRL
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.