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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG40432 Sorghum peroxisome 42.29 62.34
AT1G71480.1 Thale cress plastid 51.98 54.63
TraesCS2A01G046200.1 Wheat mitochondrion 46.7 53.27
KRH77740 Soybean cytosol 48.02 53.17
CDY36691 Canola plastid 47.14 52.45
TraesCS2B01G058300.1 Wheat mitochondrion 47.14 52.45
HORVU4Hr1G032500.2 Barley cytosol 14.54 52.38
TraesCSU01G023200.1 Wheat plastid 47.14 51.94
KRH27793 Soybean plastid 51.1 51.1
CDX68309 Canola plastid 45.81 49.29
KXG32164 Sorghum plastid 46.7 48.85
GSMUA_Achr10P... Banana plastid 48.46 48.25
VIT_18s0001g05960.t01 Wine grape plastid 55.07 47.89
Zm00001d040242_P001 Maize plastid 46.7 47.11
CDX72810 Canola plastid 48.9 46.44
HORVU2Hr1G007080.13 Barley cytosol 47.58 44.08
Bra003923.1-P Field mustard plastid 28.63 41.67
Os09t0266000-02 Rice plastid 48.9 33.53
Solyc08g081450.2.1 Tomato plastid 24.67 21.62
Solyc12g056190.1.1 Tomato plastid 23.79 19.85
Protein Annotations
EnsemblPlants:Solyc11g042620.1.1EnsemblPlantsGene:Solyc11g042620.1Gene3D:3.10.450.50GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0016020
InterPro:NTF2-like_dom_sfInterPro:SnoaL-likePANTHER:PTHR33698PANTHER:PTHR33698:SF3PFAM:PF12680SEG:seg
SUPFAM:SSF54427UniParc:UPI000276A11CUniProt:K4D832MapMan:35.2::
Description
No Description!
Coordinates
chr11:-:35645795..35656331
Molecular Weight (calculated)
25095.9 Da
IEP (calculated)
6.269
GRAVY (calculated)
-0.013
Length
227 amino acids
Sequence
(BLAST)
001: MVMLMSSTSS FSLLPLNSNP STSTTAAVVG NSPAVLHSVN CCTDYLFRIV SGHRIRQVAV RNSNRTAEVT SSSDSVTDLE SAASVVRKFY AGINRRDLDS
101: VEELIAEDCV YEDLVFPQPF VGRKAILDFF KKFTDSVGSD LQFVIDDISK EDSSAVGVTW HLEWRGRPFP FSKGCSFYRL EVVNGQMKIL YGRDSVEPAV
201: KPGETALVAI RGVAWLLQKF PQLADRL
Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.