Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 |
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc03g121460.1.1 | |
Solyc03g122030.1.1 | |
Solyc05g007200.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G71480.1 | Solyc05g007200.2.1 | AT1G14340.1 | 21798944 |
AT1G71480.1 | Solyc03g122030.1.1 | AT1G54060.1 | 21798944 |
AT1G71480.1 | Solyc03g121460.1.1 | AT3G13710.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG40432 | Sorghum | peroxisome | 42.29 | 62.34 |
AT1G71480.1 | Thale cress | plastid | 51.98 | 54.63 |
TraesCS2A01G046200.1 | Wheat | mitochondrion | 46.7 | 53.27 |
KRH77740 | Soybean | cytosol | 48.02 | 53.17 |
CDY36691 | Canola | plastid | 47.14 | 52.45 |
TraesCS2B01G058300.1 | Wheat | mitochondrion | 47.14 | 52.45 |
HORVU4Hr1G032500.2 | Barley | cytosol | 14.54 | 52.38 |
TraesCSU01G023200.1 | Wheat | plastid | 47.14 | 51.94 |
KRH27793 | Soybean | plastid | 51.1 | 51.1 |
CDX68309 | Canola | plastid | 45.81 | 49.29 |
KXG32164 | Sorghum | plastid | 46.7 | 48.85 |
GSMUA_Achr10P... | Banana | plastid | 48.46 | 48.25 |
VIT_18s0001g05960.t01 | Wine grape | plastid | 55.07 | 47.89 |
Zm00001d040242_P001 | Maize | plastid | 46.7 | 47.11 |
CDX72810 | Canola | plastid | 48.9 | 46.44 |
HORVU2Hr1G007080.13 | Barley | cytosol | 47.58 | 44.08 |
Bra003923.1-P | Field mustard | plastid | 28.63 | 41.67 |
Os09t0266000-02 | Rice | plastid | 48.9 | 33.53 |
Solyc08g081450.2.1 | Tomato | plastid | 24.67 | 21.62 |
Solyc12g056190.1.1 | Tomato | plastid | 23.79 | 19.85 |
Protein Annotations
EnsemblPlants:Solyc11g042620.1.1 | EnsemblPlantsGene:Solyc11g042620.1 | Gene3D:3.10.450.50 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 |
InterPro:NTF2-like_dom_sf | InterPro:SnoaL-like | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF3 | PFAM:PF12680 | SEG:seg |
SUPFAM:SSF54427 | UniParc:UPI000276A11C | UniProt:K4D832 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr11:-:35645795..35656331
Molecular Weight (calculated)
25095.9 Da
IEP (calculated)
6.269
GRAVY (calculated)
-0.013
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMLMSSTSS FSLLPLNSNP STSTTAAVVG NSPAVLHSVN CCTDYLFRIV SGHRIRQVAV RNSNRTAEVT SSSDSVTDLE SAASVVRKFY AGINRRDLDS
101: VEELIAEDCV YEDLVFPQPF VGRKAILDFF KKFTDSVGSD LQFVIDDISK EDSSAVGVTW HLEWRGRPFP FSKGCSFYRL EVVNGQMKIL YGRDSVEPAV
201: KPGETALVAI RGVAWLLQKF PQLADRL
101: VEELIAEDCV YEDLVFPQPF VGRKAILDFF KKFTDSVGSD LQFVIDDISK EDSSAVGVTW HLEWRGRPFP FSKGCSFYRL EVVNGQMKIL YGRDSVEPAV
201: KPGETALVAI RGVAWLLQKF PQLADRL
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.