Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 63.67 | 76.47 |
| HORVU4Hr1G032500.2 | Barley | cytosol | 19.59 | 76.19 |
| TraesCS2A01G046200.1 | Wheat | mitochondrion | 61.63 | 75.88 |
| TraesCSU01G023200.1 | Wheat | plastid | 63.67 | 75.73 |
| KXG40432 | Sorghum | peroxisome | 43.67 | 69.48 |
| KXG32164 | Sorghum | plastid | 50.61 | 57.14 |
| Zm00001d040242_P001 | Maize | plastid | 51.43 | 56.0 |
| Solyc11g042620.1.1 | Tomato | plastid | 44.08 | 47.58 |
| AT1G71480.1 | Thale cress | plastid | 41.63 | 47.22 |
| KRH77740 | Soybean | cytosol | 38.37 | 45.85 |
| CDY36691 | Canola | plastid | 37.14 | 44.61 |
| GSMUA_Achr10P... | Banana | plastid | 41.22 | 44.3 |
| KRH27793 | Soybean | plastid | 39.59 | 42.73 |
| CDX68309 | Canola | plastid | 36.73 | 42.65 |
| CDX72810 | Canola | plastid | 39.59 | 40.59 |
| Os09t0266000-02 | Rice | plastid | 51.43 | 38.07 |
| VIT_18s0001g05960.t01 | Wine grape | plastid | 38.78 | 36.4 |
| Bra003923.1-P | Field mustard | plastid | 22.86 | 35.9 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G007080.13 | EnsemblPlantsGene:HORVU2Hr1G007080 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:SnoaL-like | PANTHER:PTHR33698 |
| PANTHER:PTHR33698:SF3 | PFAM:PF12680 | SEG:seg | SUPFAM:SSF54427 | UniParc:UPI000294D8D0 | UniProt:M0XT13 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:14612013..14613171
Molecular Weight (calculated)
26890.2 Da
IEP (calculated)
9.062
GRAVY (calculated)
-0.301
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MYHVLDMRKE KKRNEQQRDK RIRTNDGGAA PSPHVGGEQE QSMALATQPL RLRAGTAAPA ACWPPCPTIR VQVGGRRRTR SVAAAAAEGS AAVKGAAAAV
101: VREFYSGVNR RDLAAVAPLI AEGCVYEDLV FPRPMVGRDR VVGFFGEFMG SVSPDLRFVI DDISGDDPSA VGVTWHLEWK GRPFPFSRGC SFYRCQPDPQ
201: RPEQIQIVYG RDCVEPATKP GELALVAIRG VTWLLERFPS LADRL
101: VREFYSGVNR RDLAAVAPLI AEGCVYEDLV FPRPMVGRDR VVGFFGEFMG SVSPDLRFVI DDISGDDPSA VGVTWHLEWK GRPFPFSRGC SFYRCQPDPQ
201: RPEQIQIVYG RDCVEPATKP GELALVAIRG VTWLLERFPS LADRL
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.