Factsheet for GSMUA_Achr10P10950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05880_001
GSMUA_Achr3P19960_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	GSMUA_Achr3P19960_001	AT1G14340.1	21798944
AT1G71480.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT1G71480.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT1G71480.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944
AT1G71480.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40432	Sorghum	peroxisome	40.35	59.74
HORVU4Hr1G032500.2	Barley	cytosol	14.91	53.97
TraesCS2A01G046200.1	Wheat	mitochondrion	44.3	50.75
TraesCSU01G023200.1	Wheat	plastid	45.61	50.49
TraesCS2B01G058300.1	Wheat	mitochondrion	44.74	50.0
Solyc11g042620.1.1	Tomato	plastid	48.25	48.46
Zm00001d040242_P001	Maize	plastid	46.93	47.56
KXG32164	Sorghum	plastid	45.18	47.47
AT1G71480.1	Thale cress	plastid	44.74	47.22
KRH77740	Soybean	cytosol	41.67	46.34
CDY36691	Canola	plastid	40.79	45.59
CDX68309	Canola	plastid	40.35	43.6
KRH27793	Soybean	plastid	42.54	42.73
CDX72810	Canola	plastid	43.86	41.84
HORVU2Hr1G007080.13	Barley	cytosol	44.3	41.22
Bra003923.1-P	Field mustard	plastid	28.07	41.03
VIT_18s0001g05960.t01	Wine grape	plastid	42.11	36.78
Os09t0266000-02	Rice	plastid	45.18	31.12

Protein Annotations

EnsemblPlants:GSMUA_Achr10P10950_001	EnsemblPlants:GSMUA_Achr10T10950_001	EnsemblPlantsGene:GSMUA_Achr10G10950_001	Gene3D:3.10.450.50	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	InterPro:NTF2-like_dom_sf	InterPro:SnoaL-like	PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	PFAM:PF12680
SEG:seg	SUPFAM:SSF54427	UniParc:UPI00029678BB	UniProt:M0RH71	MapMan:35.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G10950_001]

Coordinates

chr10:+:20595619..20598108

Molecular Weight (calculated)

25028.0 Da

IEP (calculated)

8.836

GRAVY (calculated)

-0.087

Length

228 amino acids

Sequence
(BLAST)

001: MVATALHFGA IPTLIPVNNL ARVSKEGRRG PSTTSPSSAG PLFRSGSRIS RAPATAPIIR AAAEVQTTED ALVKVSTAAD VVREFYDGIN RRDLSAVEPL
101: ISEDCVYEDL VFPRPFVGRK AILDFFKKFT ESVSADLQFV IDDISNEDSS AVGVTWHLEW RGRPFPFSKG CSFYSLQFRE GKRQIVYGRD CVEPAAKPGD
201: SALVFMVQMK QKKGGLLPVV LASHQNMF

Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.