Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 3
- plastid 4
- cytosol 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 67.02 | 65.28 |
TraesCS3D01G106500.1 | Wheat | plastid | 65.96 | 65.26 |
TraesCS3B01G122600.1 | Wheat | plastid | 65.96 | 65.26 |
TraesCS3A01G104300.1 | Wheat | plastid | 65.43 | 64.4 |
EES00126 | Sorghum | plastid | 64.89 | 63.54 |
TraesCS1D01G130300.1 | Wheat | plastid | 62.23 | 61.26 |
TraesCS1A01G124100.1 | Wheat | plastid | 61.7 | 60.73 |
TraesCS1B01G143000.1 | Wheat | plastid | 61.7 | 60.42 |
Os05t0200280-01 | Rice | plasma membrane | 61.7 | 60.1 |
PGSC0003DMT400006409 | Potato | plasma membrane | 57.98 | 59.89 |
Solyc03g121460.1.1 | Tomato | plastid | 57.98 | 59.89 |
Os01t0196500-01 | Rice | plastid | 62.77 | 58.71 |
KRH23330 | Soybean | plastid | 56.38 | 57.61 |
OQU77594 | Sorghum | plastid | 59.04 | 56.63 |
KRH10001 | Soybean | mitochondrion | 55.32 | 56.52 |
VIT_09s0002g02400.t01 | Wine grape | plastid | 57.45 | 55.96 |
Zm00001d037747_P001 | Maize | plastid | 55.85 | 55.85 |
KRH44167 | Soybean | plasma membrane | 51.6 | 55.11 |
HORVU1Hr1G028520.1 | Barley | plastid | 62.77 | 54.63 |
AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 54.26 | 54.26 |
KRH47141 | Soybean | plasma membrane | 51.06 | 53.93 |
AT1G55190.1 | Thale cress | plasma membrane | 53.72 | 53.44 |
CDY51735 | Canola | plasma membrane | 51.6 | 53.3 |
VIT_11s0016g02330.t01 | Wine grape | plastid | 53.19 | 52.91 |
CDY37483 | Canola | plasma membrane | 51.06 | 52.75 |
Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 50.53 | 52.2 |
CDY23634 | Canola | plasma membrane | 49.47 | 51.38 |
AT3G13710.1 | Thale cress | plasma membrane | 50.53 | 50.53 |
CDY33064 | Canola | cytosol, plasma membrane, plastid | 49.47 | 49.73 |
CDX97509 | Canola | plasma membrane | 47.87 | 49.72 |
CDY26125 | Canola | cytosol, plasma membrane, plastid | 49.47 | 49.21 |
Bra027406.1-P | Field mustard | plasma membrane | 47.34 | 49.17 |
HORVU3Hr1G018940.2 | Barley | plastid | 66.49 | 49.02 |
CDY24050 | Canola | cytosol, plasma membrane, plastid | 48.4 | 48.66 |
Bra037983.1-P | Field mustard | extracellular, plasma membrane | 36.17 | 48.57 |
AT1G17700.1 | Thale cress | plasma membrane | 46.28 | 48.33 |
Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 47.34 | 47.09 |
CDY08228 | Canola | plasma membrane | 47.34 | 47.09 |
GSMUA_Achr7P07600_001 | Banana | plastid | 50.53 | 45.89 |
Bra031001.1-P | Field mustard | plasma membrane | 43.62 | 45.3 |
CDX81845 | Canola | plasma membrane | 43.62 | 45.3 |
Bra025954.1-P | Field mustard | plasma membrane | 43.62 | 44.57 |
CDY26225 | Canola | plasma membrane | 43.09 | 44.02 |
CDY59501 | Canola | plasma membrane | 42.02 | 42.93 |
KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 45.21 | 42.5 |
KRH49060 | Soybean | plasma membrane | 44.15 | 41.92 |
AT4G29658.2 | Thale cress | plastid | 39.36 | 38.95 |
CDY06788 | Canola | plastid | 39.89 | 38.66 |
Bra011125.1-P | Field mustard | mitochondrion | 34.57 | 37.14 |
CDY43514 | Canola | mitochondrion | 34.57 | 37.14 |
CDY37482 | Canola | plastid | 39.89 | 35.89 |
Bra021503.1-P | Field mustard | plastid | 38.83 | 35.1 |
GSMUA_AchrUn_... | Banana | plastid | 43.62 | 34.89 |
CDY51734 | Canola | plastid | 38.3 | 34.45 |
GSMUA_Achr3P10010_001 | Banana | plastid | 37.77 | 32.87 |
GSMUA_Achr5P07440_001 | Banana | plastid | 36.7 | 32.09 |
GSMUA_Achr4P18690_001 | Banana | plastid | 35.64 | 30.32 |
CDY55133 | Canola | plasma membrane | 34.04 | 30.05 |
Bra021502.1-P | Field mustard | plastid | 34.04 | 29.91 |
CDY51733 | Canola | plastid | 34.04 | 29.91 |
GSMUA_Achr10P... | Banana | plastid | 28.72 | 29.67 |
GSMUA_Achr7P22310_001 | Banana | plastid | 29.26 | 29.26 |
GSMUA_Achr5P14320_001 | Banana | plastid | 28.19 | 28.34 |
Protein Annotations
EnsemblPlants:GSMUA_Achr7P09070_001 | EnsemblPlants:GSMUA_Achr7T09070_001 | EnsemblPlantsGene:GSMUA_Achr7G09070_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix |
UniParc:UPI000295BA51 | UniProt:M0TFZ5 | MapMan:22.8.4.3.2 | : | : | : |
Description
PRA1 family protein F2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G09070_001]
Coordinates
chr7:+:7418329..7419082
Molecular Weight (calculated)
20708.9 Da
IEP (calculated)
9.674
GRAVY (calculated)
0.727
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTYGTIPTS TGPSSSSSAT PLDYISRAKE RGRSALAMRR PWRQLANVHA MGLPPSLGEA YVRIRTNAAY FAMNYAIIVL LVVFCSLLWH PISLIVFLAC
101: LAAWLFLYFL RDEPLVFFGR TIGDRVVLIV LSVVTLVLLL LTKVTSNVLI SLLVGLLLVL IHAVLRKTED LVMEEEAAGP GKWYAAVS
101: LAAWLFLYFL RDEPLVFFGR TIGDRVVLIV LSVVTLVLLL LTKVTSNVLI SLLVGLLLVL IHAVLRKTED LVMEEEAAGP GKWYAAVS
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.