Factsheet for GSMUA_Achr1P19070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88578	Soybean	cytosol	29.47	79.25
AT5G10730.1	Thale cress	mitochondrion	77.19	76.66
KRG88574	Soybean	cytosol	21.75	76.54
Bra028572.1-P	Field mustard	mitochondrion	76.49	75.43
KRH61625	Soybean	mitochondrion	75.09	74.56
Bra009010.1-P	Field mustard	mitochondrion	75.09	74.31
Solyc08g006510.2.1	Tomato	plastid, unclear	72.63	73.4
HORVU5Hr1G073450.4	Barley	mitochondrion	73.33	71.09
TraesCS5A01G165800.1	Wheat	golgi	73.33	71.09
Os02t0556100-01	Rice	mitochondrion	72.63	70.89
KRH52293	Soybean	cytosol	32.63	70.45
TraesCS5B01G162400.1	Wheat	mitochondrion	72.63	70.41
VIT_04s0008g07400.t01	Wine grape	cytosol	72.98	70.27
Zm00001d040954_P001	Maize	cytosol	26.67	67.86
KRG88571	Soybean	extracellular	12.63	65.45
Zm00001d040953_P001	Maize	mitochondrion, plastid	42.81	63.87
KRG88572	Soybean	cytosol, extracellular	25.96	62.18
KRH52291	Soybean	mitochondrion	49.82	55.04
KRG88575	Soybean	mitochondrion	16.84	52.17
EES00762	Sorghum	mitochondrion, plastid	70.88	49.63
CDX97051	Canola	cytosol, extracellular, plastid	16.14	43.4
GSMUA_Achr4P12290_001	Banana	plastid	39.3	35.33

Protein Annotations

EnsemblPlants:GSMUA_Achr1P19070_001	EnsemblPlants:GSMUA_Achr1T19070_001	EnsemblPlantsGene:GSMUA_Achr1G19070_001	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126
PANTHER:PTHR12126:SF8	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000294AA64	UniProt:M0S165
MapMan:35.1	:	:	:	:	:

Description

NAD dependent epimerase/dehydratase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G19070_001]

Coordinates

chr1:+:14225392..14232674

Molecular Weight (calculated)

30623.1 Da

IEP (calculated)

9.729

GRAVY (calculated)

0.042

Length

285 amino acids

Sequence
(BLAST)

001: MSAIVSRLIH SPSSVSRALS SGLLNYGRLL STESNRVDEP LKVEEAETVK APPPPSEKLL VLGGNGFVGS HVCKEALDQG LSVSSLSRSG RSSIRESWAD
101: KVEWLQGSLL VPESWKDVMN DVTAVISCVG GFGSNSYMYK INGTSNINAI RAAAEKGVKR FVYISAADFG LVNYLLQGYY EGKRAAEAEL LTKFTYGGVI
201: LRPGFIYGTR QVGSMKIPLG LIGSPLEMVL QHAKPLNRLP LVGPLLTPPV NVTAVAKVAV RAANDPVFPP GIVDVHGILR YSERK

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.