CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	KRH10001	AT3G13720.1	21798944
AT5G10730.1	KRH23330	AT3G13720.1	21798944
AT5G10730.1	KRH44167	AT3G13720.1	21798944
AT5G10730.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88572	Soybean	cytosol, extracellular	87.65	59.66
KRH52293	Soybean	cytosol	93.83	57.58
KRG88578	Soybean	cytosol	38.27	29.25
KRH52291	Soybean	mitochondrion	83.95	26.36
KRH61625	Soybean	mitochondrion	82.72	23.34
GSMUA_Achr1P19070_001	Banana	plastid	76.54	21.75
Solyc08g006510.2.1	Tomato	plastid, unclear	75.31	21.63
Zm00001d040954_P001	Maize	cytosol	29.63	21.43
VIT_04s0008g07400.t01	Wine grape	cytosol	77.78	21.28
AT5G10730.1	Thale cress	mitochondrion	75.31	21.25
Bra009010.1-P	Field mustard	mitochondrion	74.07	20.83
CDX69807	Canola	mitochondrion	74.07	20.83
CDX97050	Canola	mitochondrion	74.07	20.83
Bra028572.1-P	Field mustard	mitochondrion	74.07	20.76
CDY40113	Canola	mitochondrion	74.07	20.76
CDY67689	Canola	mitochondrion	74.07	20.69
HORVU5Hr1G073450.4	Barley	mitochondrion	72.84	20.07
TraesCS5A01G165800.1	Wheat	golgi	71.6	19.73
TraesCS5B01G162400.1	Wheat	mitochondrion	71.6	19.73
Os02t0556100-01	Rice	mitochondrion	69.14	19.18
Zm00001d040953_P001	Maize	mitochondrion, plastid	44.44	18.85
EES00762	Sorghum	mitochondrion, plastid	70.37	14.0
KRH74352	Soybean	plastid	44.44	11.88
KRH39581	Soybean	mitochondrion, plastid	43.21	11.55
KRG88575	Soybean	mitochondrion	7.41	6.52
KRG88571	Soybean	extracellular	1.23	1.82

Protein Annotations

EnsemblPlants:KRG88574	EnsemblPlantsGene:GLYMA_U003200	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126	PANTHER:PTHR12126:SF8
ProteinID:KRG88574	ProteinID:KRG88574.1	SUPFAM:SSF51735	UniParc:UPI0006ED8DEC	UniProt:A0A0R0EEV6	MapMan:35.2

Description

hypothetical protein

Coordinates

chrscaffold_123:-:33894..37814

Molecular Weight (calculated)

8804.8 Da

IEP (calculated)

10.438

GRAVY (calculated)

0.225

Length

81 amino acids

Sequence
(BLAST)

1: MGGFGSNIKA IRAASDQGVK RFVYISTADF GVVNYLLQGC NIGKRAAETE LLTRFPFGGV ILRPGFFYGT RRVGSPLEMV I

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.