CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	KRH10001	AT3G13720.1	21798944
AT5G10730.1	KRH23330	AT3G13720.1	21798944
AT5G10730.1	KRH44167	AT3G13720.1	21798944
AT5G10730.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88574	Soybean	cytosol	57.58	93.83
KRG88571	Soybean	extracellular	29.55	70.91
KRG88578	Soybean	cytosol	50.76	63.21
KRG88572	Soybean	cytosol, extracellular	51.52	57.14
Zm00001d040954_P001	Maize	cytosol	39.39	46.43
KRH52291	Soybean	mitochondrion	83.33	42.64
KRH61625	Soybean	mitochondrion	78.03	35.89
Solyc08g006510.2.1	Tomato	plastid, unclear	71.21	33.33
GSMUA_Achr1P19070_001	Banana	plastid	70.45	32.63
AT5G10730.1	Thale cress	mitochondrion	69.7	32.06
VIT_04s0008g07400.t01	Wine grape	cytosol	71.21	31.76
Bra009010.1-P	Field mustard	mitochondrion	68.94	31.6
CDX97050	Canola	mitochondrion	68.94	31.6
CDX69807	Canola	mitochondrion	68.94	31.6
CDY40113	Canola	mitochondrion	68.94	31.49
Bra028572.1-P	Field mustard	mitochondrion	68.94	31.49
CDY67689	Canola	mitochondrion	68.94	31.38
HORVU5Hr1G073450.4	Barley	mitochondrion	66.67	29.93
TraesCS5A01G165800.1	Wheat	golgi	66.67	29.93
Os02t0556100-01	Rice	mitochondrion	65.91	29.79
TraesCS5B01G162400.1	Wheat	mitochondrion	65.91	29.59
EES00762	Sorghum	mitochondrion, plastid	65.15	21.13
Zm00001d040953_P001	Maize	mitochondrion, plastid	27.27	18.85
KRH74352	Soybean	plastid	37.12	16.17
KRH39581	Soybean	mitochondrion, plastid	36.36	15.84
KRG88575	Soybean	mitochondrion	4.55	6.52

Protein Annotations

EMBL:ACUP02003417	EnsemblPlants:KRH52293	EnsemblPlantsGene:GLYMA_06G059400	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0003954	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0055114
GO:GO:1901006	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126	PANTHER:PTHR12126:SF1	ProteinID:KRH52293	ProteinID:KRH52293.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0006EDCC0E	UniProt:A0A0R0JIR5	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr6:-:4492849..4496839

Molecular Weight (calculated)

14033.2 Da

IEP (calculated)

9.803

GRAVY (calculated)

0.337

Length

132 amino acids

Sequence
(BLAST)

001: MGGFGSNIKA IRAASDQGVK RFVYISTADF GVVNDLLQGY NIGKRAAETE LLNRFPFGGV ILRPGFFYGT RRVGSPLEMV LPPLVGPLMT TAPVNVTAVA
101: KVAVTAATAT DPVFPPGIID AYGIQRLLSE YI

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.