CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40113	Canola	mitochondrion	99.31	99.65
Bra028572.1-P	Field mustard	mitochondrion	98.28	98.62
CDX97050	Canola	mitochondrion	91.72	92.36
CDX69807	Canola	mitochondrion	91.03	91.67
KRG88578	Soybean	cytosol	30.0	82.08
KRH61625	Soybean	mitochondrion	77.93	78.75
Solyc08g006510.2.1	Tomato	plastid, unclear	76.21	78.37
KRG88574	Soybean	cytosol	20.69	74.07
VIT_04s0008g07400.t01	Wine grape	cytosol	74.83	73.31
KRH52293	Soybean	cytosol	31.38	68.94
KRG88571	Soybean	extracellular	12.41	65.45
KRG88572	Soybean	cytosol, extracellular	26.21	63.87
CDX90965	Canola	mitochondrion	53.79	57.56
CDX85525	Canola	mitochondrion, plastid	53.79	57.56
KRG88575	Soybean	mitochondrion	17.93	56.52
KRH52291	Soybean	mitochondrion	49.66	55.81
CDX97051	Canola	cytosol, extracellular, plastid	17.93	49.06
CDY64420	Canola	plastid	34.48	34.48
CDY12254	Canola	plastid	34.48	34.36

Protein Annotations

EnsemblPlants:CDY67689	EnsemblPlantsGene:GSBRNA2T00065999001	Gene3D:3.40.50.720	GO:A0A078JLK1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	PFAM:PF13460	ProteinID:CDY67689	ProteinID:CDY67689.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EEFA63	UniProt:A0A078JLK1	MapMan:35.1	:	:

Description

BnaAnng24990DBnaAnng24990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLK1]

Coordinates

chrLK036395:-:6843..9131

Molecular Weight (calculated)

31282.5 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.067

Length

290 amino acids

Sequence
(BLAST)

001: MRTIVSRLIR FKSSFAQTRF VSASYSGGGR YLSTDSNKID EPFNVEEAET VHVPPPPTEK LLVLGGNGFV GSHVCKEALD RGLYVSSLSR SGKSSLQESW
101: ASRVTWHQGN LLSSDSLKDA LDGVTSVISC VGGFGSNSYM YKINGTANIN AIRAASEKAG VKRFVYISAA DFGLANYLLS GYYEGKRAAE TELLTRFAYG
201: GIVLRPGFIY GTRSVGSMKI PLGVFGSPME MVLQQAKPLN QLPLVGPLFT PPVNVESVAK VAVRAATDPV FPPGIVDVHG IQRYSQQKSR

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.