Factsheet for VIT_04s0008g07400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88578	Soybean	cytosol	29.05	81.13
KRG88574	Soybean	cytosol	21.28	77.78
Solyc08g006510.2.1	Tomato	plastid, unclear	72.97	76.6
AT5G10730.1	Thale cress	mitochondrion	73.65	75.96
KRH61625	Soybean	mitochondrion	73.65	75.96
CDY40113	Canola	mitochondrion	73.31	75.09
Bra009010.1-P	Field mustard	mitochondrion	72.97	75.0
CDX69807	Canola	mitochondrion	72.97	75.0
CDX97050	Canola	mitochondrion	72.97	75.0
CDY67689	Canola	mitochondrion	73.31	74.83
Bra028572.1-P	Field mustard	mitochondrion	72.97	74.74
GSMUA_Achr1P19070_001	Banana	plastid	70.27	72.98
KRH52293	Soybean	cytosol	31.76	71.21
KRG88572	Soybean	cytosol, extracellular	26.35	65.55
KRG88571	Soybean	extracellular	11.82	63.64
Os02t0556100-01	Rice	mitochondrion	61.82	62.67
Zm00001d040954_P001	Maize	cytosol	23.31	61.61
HORVU5Hr1G073450.4	Barley	mitochondrion	60.81	61.22
TraesCS5A01G165800.1	Wheat	golgi	60.14	60.54
TraesCS5B01G162400.1	Wheat	mitochondrion	59.46	59.86
Zm00001d040953_P001	Maize	mitochondrion, plastid	35.47	54.97
KRH52291	Soybean	mitochondrion	46.96	53.88
KRG88575	Soybean	mitochondrion	15.2	48.91
EES00762	Sorghum	mitochondrion, plastid	58.78	42.75
VIT_02s0012g01900.t01	Wine grape	plastid	36.82	37.07

Protein Annotations

EntrezGene:100263954	wikigene:100263954	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB46910	ProteinID:CCB46910.1
UniProt:F6H3M3	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0055114	GO:GO:1901006	EntrezGene:LOC100263954
wikigene:LOC100263954	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR12126	PANTHER:PTHR12126:SF8
SUPFAM:SSF51735	TIGR:TC62970	UniParc:UPI0002109D77	ArrayExpress:VIT_04s0008g07400	EnsemblPlantsGene:VIT_04s0008g07400	EnsemblPlants:VIT_04s0008g07400.t01
RefSeq:XP_002263819	RefSeq:XP_002263819.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:7769854..7809114

Molecular Weight (calculated)

32091.8 Da

IEP (calculated)

9.716

GRAVY (calculated)

-0.033

Length

296 amino acids

Sequence
(BLAST)

001: MVNQMKTWRF EGLNWALFFE MSANRLENAM AAFRNGRCLS TDSNKVDEPL KVEEAETVDI PPPPTEKLLV LGGNGFVGSH ICKEALSRGI AVASLSRSGR
101: SSINDPWANN IEWHRGNLLS SDSWKEALSG VTSVISCVGG FGSSSYMYKI NGTANINAIR AAAEKGVKRF VYISAADFGV ANYLLQGYYE GKRAAETELL
201: TKFPYGGVIL RPGFIYGTRQ VGSMKLPLGV IGSPLEMVLK HAKPLNQVPL VGPLFTPPVN VKSVAKVAVR AATDTVFPPG IIDVYGILRY TQPKSS

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.