Factsheet for Solyc08g006510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g121460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	Solyc03g121460.1.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88578	Soybean	cytosol	30.14	80.19
AT5G10730.1	Thale cress	mitochondrion	79.08	77.7
CDX97050	Canola	mitochondrion	78.37	76.74
CDY40113	Canola	mitochondrion	78.37	76.47
Bra009010.1-P	Field mustard	mitochondrion	78.01	76.39
CDX69807	Canola	mitochondrion	78.01	76.39
KRH61625	Soybean	mitochondrion	77.66	76.31
CDY67689	Canola	mitochondrion	78.37	76.21
Bra028572.1-P	Field mustard	mitochondrion	77.66	75.78
KRG88574	Soybean	cytosol	21.63	75.31
VIT_04s0008g07400.t01	Wine grape	cytosol	76.6	72.97
GSMUA_Achr1P19070_001	Banana	plastid	73.4	72.63
KRH52293	Soybean	cytosol	33.33	71.21
KRG88572	Soybean	cytosol, extracellular	27.66	65.55
Os02t0556100-01	Rice	mitochondrion	65.96	63.7
KRG88571	Soybean	extracellular	12.41	63.64
Zm00001d040954_P001	Maize	cytosol	24.11	60.71
HORVU5Hr1G073450.4	Barley	mitochondrion	63.12	60.54
TraesCS5A01G165800.1	Wheat	golgi	63.12	60.54
TraesCS5B01G162400.1	Wheat	mitochondrion	62.77	60.2
Zm00001d040953_P001	Maize	mitochondrion, plastid	38.3	56.54
KRH52291	Soybean	mitochondrion	50.71	55.43
KRG88575	Soybean	mitochondrion	16.67	51.09
EES00762	Sorghum	mitochondrion, plastid	61.35	42.51
Solyc08g076450.2.1	Tomato	plastid	34.04	31.17

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0055114	GO:GO:1901006	UniProt:K4CID9	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13460	PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc08g006510.2	EnsemblPlants:Solyc08g006510.2.1
UniParc:UPI000276C044	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:1108336..1124190

Molecular Weight (calculated)

30519.7 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.063

Length

282 amino acids

Sequence
(BLAST)

001: MSRLIQARSS LSRFWTGSSR NVRFLSTESN KTDEPFKVEE AETVNMPPPP TEKLLVLGGN GFVGSHVCKE ALDRGLTVAS LSRTGRSSIQ DSWANNVIWH
101: QGNLFSTDSW KDALKGVTSV ISCVGGFGSN SHMYKINGTA NINAIRAASE EGVKRFVYIS AADFGIANYV LQGYYDGKGA AETELLTRYP YGGIILRPGF
201: IYGTRRVGSM KLPLGVIGSP LEMILQRAKP LSQIPLVGPL FTPPVNVTAV AKVAVRAATD PVFPPGVIDV HGILRYSQQR SV

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.