Factsheet for Solyc08g076450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038371	Potato	plastid	93.83	93.53
PGSC0003DMT400038370	Potato	cytosol	58.44	87.8
VIT_02s0012g01900.t01	Wine grape	plastid	69.16	72.45
KRH74352	Soybean	plastid	68.83	69.97
KRH39581	Soybean	mitochondrion, plastid	68.83	69.97
Zm00001d000123_P003	Maize	plastid	66.88	67.32
EES10717	Sorghum	plastid	66.88	67.32
Os04t0403500-01	Rice	plastid	68.18	67.31
Bra023250.1-P	Field mustard	plastid	62.99	66.67
GSMUA_Achr4P12290_001	Banana	plastid	68.51	66.56
CDY64420	Canola	plastid	62.66	66.55
CDY12254	Canola	plastid	62.66	66.32
TraesCS2A01G290300.1	Wheat	plastid	65.91	65.48
AT1G32220.1	Thale cress	plastid	62.66	65.2
TraesCS2B01G306800.1	Wheat	plastid	65.58	65.16
TraesCS2D01G288200.1	Wheat	plastid	65.26	64.84
HORVU2Hr1G071860.2	Barley	plastid	65.26	54.62
Solyc08g006510.2.1	Tomato	plastid, unclear	31.17	34.04

Protein Annotations

EnsemblPlants:Solyc08g076450.2.1	EnsemblPlantsGene:Solyc08g076450.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0055114	GO:GO:1901006
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126	PANTHER:PTHR12126:SF5	PFAM:PF13460	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000276BEC2	UniProt:K4CN08	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:-:60455720..60460642

Molecular Weight (calculated)

32904.2 Da

IEP (calculated)

5.900

GRAVY (calculated)

0.131

Length

308 amino acids

Sequence
(BLAST)

001: MATFSNIGAI CKVTSAPSLS STSSRALFPT TLRSYSHSQV SRSRSCRLCI KSSYAEAVRG DPNSDAIDVV ADVKTERIVV IGGSGFVGSA ICKAAVSEGI
101: EVISLSRSGR PSKSDSWVDQ VTWITGDVFY ANWDEVLIGA TAVVSTLGGF GSDEQMLRIN GEANVVAVNA AKEYGTPKFI LISVHDYNLP SFLQSSYFIG
201: KRKAESEVLS KFPSSGVVLR PAFIYGKRKV DGFEIPLDLI GEPLEKLLRA TESFTKPLNS LPASDLILAP PVSVDDVAYA VINAVKDDDC FGIFTINQIK
301: EAAAGVKV

Best Arabidopsis Sequence Match ( AT1G32220.1 )
(BLAST)

001: MTSFLSFSAI SAHPPTFSGA SFRPRSFSPR LFKSCVKCTY AEAGLSSASW SAPIDIVADV KSERVVVLGG NGFVGSAICK AAISNGIEVV SVSRSGRPNF
101: EDSWLDQVTW VTGDVFYLNW DEVLLGATAV VSTIGGFGNE EQMKRINGEA NVTAVNAAKD FGVPKFVLIT VHDYNLPPFI LSNGYFTGKR NAEAELLSKY
201: PTSGVVLRPG FIYGKRKVNG IEVPLDLVGE PLDKIYDSAE RFIRPLRSLP ASDLILAPPV NVDDLALAVI NAVKDDDFFG IFTIEQIKEA AAKMRA

Arabidopsis Description

Uncharacterized protein At1g32220, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FVR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.