CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74352	Soybean	plastid	95.05	95.05
PGSC0003DMT400038370	Potato	cytosol	52.15	77.07
VIT_02s0012g01900.t01	Wine grape	plastid	72.61	74.83
CDY64420	Canola	plastid	67.0	70.0
Zm00001d000123_P003	Maize	plastid	70.3	69.61
Bra023250.1-P	Field mustard	plastid	66.67	69.42
CDY12254	Canola	plastid	66.67	69.42
Solyc08g076450.2.1	Tomato	plastid	69.97	68.83
EES10717	Sorghum	plastid	69.31	68.63
PGSC0003DMT400038371	Potato	plastid	69.64	68.28
AT1G32220.1	Thale cress	plastid	66.67	68.24
Os04t0403500-01	Rice	plastid	69.97	67.95
GSMUA_Achr4P12290_001	Banana	plastid	69.64	66.56
TraesCS2A01G290300.1	Wheat	plastid	66.67	65.16
TraesCS2B01G306800.1	Wheat	plastid	66.67	65.16
TraesCS2D01G288200.1	Wheat	plastid	66.67	65.16
HORVU2Hr1G071860.2	Barley	plastid	67.33	55.43
KRG88574	Soybean	cytosol	11.55	43.21
KRG88572	Soybean	cytosol, extracellular	15.51	39.5
KRH52293	Soybean	cytosol	15.84	36.36
KRG88578	Soybean	cytosol	12.54	35.85
KRH61625	Soybean	mitochondrion	33.0	34.84
KRH52291	Soybean	mitochondrion	25.08	29.46
KRG88571	Soybean	extracellular	4.95	27.27
KRG88575	Soybean	mitochondrion	6.6	21.74

Protein Annotations

EntrezGene:100799653	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02005943	EnsemblPlantsGene:GLYMA_09G207700	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0055114	GO:GO:1901006	UniProt:I1L506	EnsemblPlants:KRH39581	ProteinID:KRH39581	ProteinID:KRH39581.1
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR12126	PANTHER:PTHR12126:SF5	SUPFAM:SSF51735
UniParc:UPI0002337D1E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:43204400..43208738

Molecular Weight (calculated)

32605.9 Da

IEP (calculated)

6.289

GRAVY (calculated)

0.133

Length

303 amino acids

Sequence
(BLAST)

001: MASFLSSLPA VSARPIPTSA FPLRKPLFQT PPTLHFKNHR FAVSCSYAEA GVNADSSSNT IDVVADVRSE RIVVLGGNGF VGSAICKAAV SRGIEVISLS
101: RSGRPTYSDA WVDQVTWISG DVFYVNWDEV LVGATAVVST LGGFGSEEQM KRINGEANVV AVNAAKEYGI PKFILISVHD YNLPSFLLSS GYFTGKRKAE
201: SEVLSKYPNS GIVLRPAFIY GKRRVNGYEL PLDLVGEPAE KILRAIENFT KPLSSLPASD LLLAPPVSVD DVALAVINGV TDDDFFGVFT IDQIKDAANK
301: VRV

Best Arabidopsis Sequence Match ( AT1G32220.1 )
(BLAST)

001: MTSFLSFSAI SAHPPTFSGA SFRPRSFSPR LFKSCVKCTY AEAGLSSASW SAPIDIVADV KSERVVVLGG NGFVGSAICK AAISNGIEVV SVSRSGRPNF
101: EDSWLDQVTW VTGDVFYLNW DEVLLGATAV VSTIGGFGNE EQMKRINGEA NVTAVNAAKD FGVPKFVLIT VHDYNLPPFI LSNGYFTGKR NAEAELLSKY
201: PTSGVVLRPG FIYGKRKVNG IEVPLDLVGE PLDKIYDSAE RFIRPLRSLP ASDLILAPPV NVDDLALAVI NAVKDDDFFG IFTIEQIKEA AAKMRA

Arabidopsis Description

Uncharacterized protein At1g32220, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FVR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.