Factsheet for Zm00001d000123_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10717	Sorghum	plastid	95.1	95.1
TraesCS2D01G288200.1	Wheat	plastid	83.33	82.26
TraesCS2B01G306800.1	Wheat	plastid	80.39	79.35
Os04t0403500-01	Rice	plastid	80.72	79.17
TraesCS2A01G290300.1	Wheat	plastid	78.1	77.1
PGSC0003DMT400038370	Potato	cytosol	49.67	74.15
KRH39581	Soybean	mitochondrion, plastid	69.61	70.3
HORVU2Hr1G071860.2	Barley	plastid	84.31	70.11
KRH74352	Soybean	plastid	69.28	69.97
VIT_02s0012g01900.t01	Wine grape	plastid	66.67	69.39
GSMUA_Achr4P12290_001	Banana	plastid	70.92	68.45
CDY12254	Canola	plastid	64.71	68.04
Bra023250.1-P	Field mustard	plastid	64.38	67.7
CDY64420	Canola	plastid	63.73	67.24
Solyc08g076450.2.1	Tomato	plastid	67.32	66.88
AT1G32220.1	Thale cress	plastid	64.05	66.22
PGSC0003DMT400038371	Potato	plastid	66.34	65.7
Zm00001d040954_P001	Maize	cytosol	13.07	35.71
Zm00001d040953_P001	Maize	mitochondrion, plastid	20.26	32.46

Protein Annotations

EntrezGene:100274377	Gene3D:3.40.50.720	MapMan:35.1	UniProt:B4FTR5	EMBL:BT040503	EMBL:BT042884
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0010287	GO:GO:0016853	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR12126
PANTHER:PTHR12126:SF5	SUPFAM:SSF51735	UniParc:UPI00017B7BB4	EnsemblPlantsGene:Zm00001d000123	EnsemblPlants:Zm00001d000123_P003	EnsemblPlants:Zm00001d000123_T003
SEG:seg	:	:	:	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chrB73V4_ctg56:+:100411..104378

Molecular Weight (calculated)

32583.2 Da

IEP (calculated)

8.428

GRAVY (calculated)

0.153

Length

306 amino acids

Sequence
(BLAST)

001: MAPSPILVRP PALANSPLPP PRCVAAVAAA PAVRTAPAAP FSRLRTKCRF AASDVREDYS STPIDIVADV KTEKIVVLGG SGFVGSAICR AAVSKGIEVV
101: SFSRSGRPSY SDPWVDQVNW LPGDVFYARW DEVLVGATAV VSTLGGFGNE EQMKRINGEA NVIAVNAAKE NGVPKFILIS VHDYNLPSFL LTSGYFTGKR
201: KAESEVLSKY PASGVVLRPG FIYGKRKVNG FEVPLDAVGQ PLEKLLSSVE NFTKPLSSLP ASDLILAPPV SVDDVAYAVI NGVIDDSFFG VFTIEQIKEA
301: ASKVRV

Best Arabidopsis Sequence Match ( AT1G32220.1 )
(BLAST)

001: MTSFLSFSAI SAHPPTFSGA SFRPRSFSPR LFKSCVKCTY AEAGLSSASW SAPIDIVADV KSERVVVLGG NGFVGSAICK AAISNGIEVV SVSRSGRPNF
101: EDSWLDQVTW VTGDVFYLNW DEVLLGATAV VSTIGGFGNE EQMKRINGEA NVTAVNAAKD FGVPKFVLIT VHDYNLPPFI LSNGYFTGKR NAEAELLSKY
201: PTSGVVLRPG FIYGKRKVNG IEVPLDLVGE PLDKIYDSAE RFIRPLRSLP ASDLILAPPV NVDDLALAVI NAVKDDDFFG IFTIEQIKEA AAKMRA

Arabidopsis Description

Uncharacterized protein At1g32220, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FVR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.