CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000123_P003	Maize	plastid	95.1	95.1
TraesCS2D01G288200.1	Wheat	plastid	82.68	81.61
TraesCS2B01G306800.1	Wheat	plastid	79.74	78.71
Os04t0403500-01	Rice	plastid	79.74	78.21
TraesCS2A01G290300.1	Wheat	plastid	76.47	75.48
PGSC0003DMT400038370	Potato	cytosol	49.67	74.15
HORVU2Hr1G071860.2	Barley	plastid	83.66	69.57
KRH39581	Soybean	mitochondrion, plastid	68.63	69.31
GSMUA_Achr4P12290_001	Banana	plastid	71.57	69.09
KRH74352	Soybean	plastid	67.97	68.65
VIT_02s0012g01900.t01	Wine grape	plastid	65.03	67.69
Solyc08g076450.2.1	Tomato	plastid	67.32	66.88
Bra023250.1-P	Field mustard	plastid	63.07	66.32
CDY64420	Canola	plastid	62.75	66.21
CDY12254	Canola	plastid	62.75	65.98
AT1G32220.1	Thale cress	plastid	63.4	65.54
PGSC0003DMT400038371	Potato	plastid	66.01	65.37
EES00762	Sorghum	mitochondrion, plastid	31.37	23.59

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:8072065	UniProt:C5YFF8	EnsemblPlants:EES10717	ProteinID:EES10717
ProteinID:EES10717.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010287
GO:GO:0055114	GO:GO:1901006	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR12126
PANTHER:PTHR12126:SF5	EnsemblPlantsGene:SORBI_3006G063900	SUPFAM:SSF51735	unigene:Sbi.1822	UniParc:UPI0001A86B2F	RefSeq:XP_002446389.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:42350403..42354293

Molecular Weight (calculated)

32516.1 Da

IEP (calculated)

8.009

GRAVY (calculated)

0.175

Length

306 amino acids

Sequence
(BLAST)

001: MAPSPLLVRP PAMANSPLPP PRCAAAVAAA PAVRTAPAAP LSRLRTKCRF AASDVREDYS STPIDIVADV KTEKIVVLGG SGFVGSAICK AAVATGIEVV
101: SFSRSGRPAY SDPWVDQVNW LAGDVFYARW DEVLVGSTAV VSTLGGFGNE EQMKRINGEA NVIAVNAAKE YGVPKFILIS VHDYNLPSFL LTSGYFTGKR
201: KAESEVLSKY PASGVVLRPG FIYGKRKVNG FEVPLDAVGQ PLERLLSSVE NFTKPLNSLP ASDLILAPPV SVDDVAYAVI NGVVDDSFFG VFTIEQIKEA
301: AAKVRV

Best Arabidopsis Sequence Match ( AT1G32220.1 )
(BLAST)

001: MTSFLSFSAI SAHPPTFSGA SFRPRSFSPR LFKSCVKCTY AEAGLSSASW SAPIDIVADV KSERVVVLGG NGFVGSAICK AAISNGIEVV SVSRSGRPNF
101: EDSWLDQVTW VTGDVFYLNW DEVLLGATAV VSTIGGFGNE EQMKRINGEA NVTAVNAAKD FGVPKFVLIT VHDYNLPPFI LSNGYFTGKR NAEAELLSKY
201: PTSGVVLRPG FIYGKRKVNG IEVPLDLVGE PLDKIYDSAE RFIRPLRSLP ASDLILAPPV NVDDLALAVI NAVKDDDFFG IFTIEQIKEA AAKMRA

Arabidopsis Description

Uncharacterized protein At1g32220, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FVR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.