CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	EES00126	AT3G13720.1	21798944
AT5G10730.1	OQU77594	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G162400.1	Wheat	mitochondrion	57.99	80.27
TraesCS5A01G165800.1	Wheat	golgi	57.99	80.27
HORVU5Hr1G073450.4	Barley	mitochondrion	57.99	80.27
Zm00001d040953_P001	Maize	mitochondrion, plastid	36.36	77.49
Os02t0556100-01	Rice	mitochondrion	55.28	77.05
GSMUA_Achr1P19070_001	Banana	plastid	49.63	70.88
KRG88574	Soybean	cytosol	14.0	70.37
Bra028572.1-P	Field mustard	mitochondrion	47.67	67.13
Bra009010.1-P	Field mustard	mitochondrion	47.42	67.01
KRG88578	Soybean	cytosol	17.44	66.98
AT5G10730.1	Thale cress	mitochondrion	47.17	66.9
KRH52293	Soybean	cytosol	21.13	65.15
KRH61625	Soybean	mitochondrion	44.23	62.72
Solyc08g006510.2.1	Tomato	plastid, unclear	42.51	61.35
VIT_04s0008g07400.t01	Wine grape	cytosol	42.75	58.78
KRG88571	Soybean	extracellular	7.86	58.18
KRG88572	Soybean	cytosol, extracellular	16.71	57.14
KRH52291	Soybean	mitochondrion	30.22	47.67
CDX97051	Canola	cytosol, extracellular, plastid	11.06	42.45
KRG88575	Soybean	mitochondrion	8.35	36.96
EES10717	Sorghum	plastid	23.59	31.37

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:C5XKN3	EnsemblPlants:EES00762	ProteinID:EES00762	ProteinID:EES00762.1
InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050662	GO:GO:0055114	GO:GO:1901006
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	EnsemblPlantsGene:SORBI_3003G166500	SUPFAM:SSF51735
unigene:Sbi.18517	UniParc:UPI0001A845CC	RefSeq:XP_002455642.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:25677689..25715902

Molecular Weight (calculated)

43839.2 Da

IEP (calculated)

10.523

GRAVY (calculated)

-0.058

Length

407 amino acids

Sequence
(BLAST)

001: MAMRSAVARL IRSSSASPSR LSSSSILLKS GNAFFSNATP SDQKHIEESF NATPSDRKHI EEPFEVKEAE PVNASKSSPE KLLVLGGSGF VGSHVCKEAL
101: DKGLVVSSLS RSGKPSLNEP WADKVIWNQG DLLEPASLKD AMDNVSAVLN KKVGALSCPR RLQSHARALC CIPIPSSVTL HRRSLAAGHR QRASASAWTH
201: ITASRRPRCV IACLYVRAPP TQQRCPHPAI PHGRLLQFPV VIQQQPLVSC VGGFGSNSFM YKINGTANIN AIRTAAEKGV KRFVYVSAAD FGLLNYLLQG
301: YYEGKRASEA ELLSKFTYGG VILRPGFIHG TRRVGSVKIP LGLVGSPMQM VLQNAKLLTR LPLIGPLLTP PVSVASVGKV AVRAATDPVF PPGIVDVYGI
401: MRYSEQN

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.