CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	KRH10001	AT3G13720.1	21798944
AT5G10730.1	KRH23330	AT3G13720.1	21798944
AT5G10730.1	KRH44167	AT3G13720.1	21798944
AT5G10730.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88578	Soybean	cytosol	76.36	39.62
KRH52293	Soybean	cytosol	70.91	29.55
Zm00001d040954_P001	Maize	cytosol	58.18	28.57
KRH52291	Soybean	mitochondrion	89.09	18.99
KRH61625	Soybean	mitochondrion	76.36	14.63
GSMUA_Achr1P19070_001	Banana	plastid	65.45	12.63
AT5G10730.1	Thale cress	mitochondrion	65.45	12.54
CDX97050	Canola	mitochondrion	65.45	12.5
Bra009010.1-P	Field mustard	mitochondrion	65.45	12.5
CDX69807	Canola	mitochondrion	65.45	12.5
CDY40113	Canola	mitochondrion	65.45	12.46
Bra028572.1-P	Field mustard	mitochondrion	65.45	12.46
CDY67689	Canola	mitochondrion	65.45	12.41
Solyc08g006510.2.1	Tomato	plastid, unclear	63.64	12.41
Os02t0556100-01	Rice	mitochondrion	63.64	11.99
VIT_04s0008g07400.t01	Wine grape	cytosol	63.64	11.82
HORVU5Hr1G073450.4	Barley	mitochondrion	61.82	11.56
TraesCS5A01G165800.1	Wheat	golgi	61.82	11.56
TraesCS5B01G162400.1	Wheat	mitochondrion	60.0	11.22
EES00762	Sorghum	mitochondrion, plastid	58.18	7.86
KRH74352	Soybean	plastid	30.91	5.61
KRH39581	Soybean	mitochondrion, plastid	27.27	4.95
KRG88574	Soybean	cytosol	1.82	1.23
KRG88575	Soybean	mitochondrion	1.82	1.09
Zm00001d040953_P001	Maize	mitochondrion, plastid	0.0	0.0
KRG88572	Soybean	cytosol, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:KRG88571	EnsemblPlantsGene:GLYMA_U0030002	ProteinID:KRG88571	ProteinID:KRG88571.1	SEG:seg	UniParc:UPI0006ED74FE
UniProt:A0A0R0E371	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_123:-:24086..24253

Molecular Weight (calculated)

5656.9 Da

IEP (calculated)

7.550

GRAVY (calculated)

0.427

Length

55 amino acids

Sequence
(BLAST)

1: VLRVAKPSNH IPFVGPLLTP PDAVAKVAVT AATATDPVFP PGIIDANGIQ RLLSE

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.