Factsheet for TraesCS5A01G165800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT5G10730.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT5G10730.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT5G10730.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT5G10730.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT5G10730.1	TraesCS3D01G106500.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G162400.1	Wheat	mitochondrion	98.64	98.64
HORVU5Hr1G073450.4	Barley	mitochondrion	96.94	96.94
Os02t0556100-01	Rice	mitochondrion	81.97	82.53
Zm00001d040954_P001	Maize	cytosol	30.61	80.36
GSMUA_Achr1P19070_001	Banana	plastid	71.09	73.33
KRG88574	Soybean	cytosol	19.73	71.6
KRG88578	Soybean	cytosol	25.17	69.81
Bra028572.1-P	Field mustard	mitochondrion	67.35	68.51
AT5G10730.1	Thale cress	mitochondrion	66.67	68.29
Bra009010.1-P	Field mustard	mitochondrion	65.65	67.01
KRH52293	Soybean	cytosol	29.93	66.67
KRH61625	Soybean	mitochondrion	63.61	65.16
Solyc08g006510.2.1	Tomato	plastid, unclear	60.54	63.12
KRG88571	Soybean	extracellular	11.56	61.82
VIT_04s0008g07400.t01	Wine grape	cytosol	60.54	60.14
KRG88572	Soybean	cytosol, extracellular	24.15	59.66
EES00762	Sorghum	mitochondrion, plastid	80.27	57.99
KRH52291	Soybean	mitochondrion	46.26	52.71
KRG88575	Soybean	mitochondrion	14.97	47.83
CDX97051	Canola	cytosol, extracellular, plastid	14.29	39.62
TraesCS2A01G290300.1	Wheat	plastid	35.71	33.87

Protein Annotations

EnsemblPlants:TraesCS5A01G165800.1	EnsemblPlantsGene:TraesCS5A01G165800	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126
PANTHER:PTHR12126:SF8	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	MapMan:35.1	:

Description

No Description!

Coordinates

chr5A:-:354317621..354325625

Molecular Weight (calculated)

31269.9 Da

IEP (calculated)

10.087

GRAVY (calculated)

0.006

Length

294 amino acids

Sequence
(BLAST)

001: MRSALSRLIR SSCSVSPSRL SSPVLLKNGK AFSSDATPRD SGRVDEPFKV EEAEPVKVPP PPPSPHKLLV LGGSGFVGSH VCKEALERGF VVSSLNRSGK
101: PSISESWADK VIWNQGNLLE PASLEDSMDG VSAVVSCVGG FGSNSQMFKL NGTANINAIR VAAEKGIKRF VYVSAADFGL VNYLLQGYYE GKRAAEAELL
201: SKFTYGGVIL RPGFIHGTRR VGSVNIPLGL VGSPMQMVLQ NAKPLTRLPL VGPMLTPPVS ATSVAKVAVR AATDPVFPPG IVDVYGIMRY SEQK

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.