Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G130300.1 | Wheat | plastid | 98.44 | 98.95 |
| TraesCS1A01G124100.1 | Wheat | plastid | 97.4 | 97.91 |
| HORVU1Hr1G028520.1 | Barley | plastid | 95.83 | 85.19 |
| Os05t0200280-01 | Rice | plasma membrane | 79.17 | 78.76 |
| Zm00001d037747_P001 | Maize | plastid | 72.4 | 73.94 |
| OQU77594 | Sorghum | plastid | 74.48 | 72.96 |
| TraesCS3B01G122600.1 | Wheat | plastid | 71.35 | 72.11 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 60.42 | 61.7 |
| KRH23330 | Soybean | plastid | 51.56 | 53.8 |
| KRH10001 | Soybean | mitochondrion | 51.56 | 53.8 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 48.44 | 51.1 |
| Solyc03g121460.1.1 | Tomato | plastid | 47.4 | 50.0 |
| KRH47141 | Soybean | plasma membrane | 45.31 | 48.88 |
| KRH44167 | Soybean | plasma membrane | 44.79 | 48.86 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 48.44 | 48.19 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 46.88 | 47.87 |
| AT1G55190.1 | Thale cress | plasma membrane | 46.35 | 47.09 |
| CDX97509 | Canola | plasma membrane | 43.75 | 46.41 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 45.31 | 46.03 |
| CDY08228 | Canola | plasma membrane | 45.31 | 46.03 |
| CDY23634 | Canola | plasma membrane | 43.23 | 45.86 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 44.27 | 45.45 |
| Bra027406.1-P | Field mustard | plasma membrane | 42.19 | 44.75 |
| AT3G13710.1 | Thale cress | plasma membrane | 43.75 | 44.68 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 43.23 | 44.38 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 32.29 | 44.29 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 43.23 | 43.92 |
| CDY51735 | Canola | plasma membrane | 40.1 | 42.31 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 40.1 | 42.31 |
| AT1G17700.1 | Thale cress | plasma membrane | 39.58 | 42.22 |
| VIT_11s0016g02330.t01 | Wine grape | plastid | 41.15 | 41.8 |
| CDY37483 | Canola | plasma membrane | 39.58 | 41.76 |
| CDY26225 | Canola | plasma membrane | 39.58 | 41.3 |
| Bra025954.1-P | Field mustard | plasma membrane | 39.06 | 40.76 |
| CDX81845 | Canola | plasma membrane | 38.02 | 40.33 |
| Bra031001.1-P | Field mustard | plasma membrane | 38.02 | 40.33 |
| CDY59501 | Canola | plasma membrane | 36.98 | 38.59 |
| TraesCS5B01G385000.1 | Wheat | extracellular, plasma membrane | 28.65 | 38.46 |
| KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 36.98 | 35.5 |
| KRH49060 | Soybean | plasma membrane | 36.46 | 35.35 |
| TraesCS5B01G447900.1 | Wheat | plastid | 39.06 | 32.33 |
| CDY06788 | Canola | plastid | 31.77 | 31.44 |
| AT4G29658.2 | Thale cress | plastid | 30.73 | 31.05 |
| TraesCS3B01G380000.1 | Wheat | plastid | 33.85 | 30.52 |
| CDY43514 | Canola | mitochondrion | 27.6 | 30.29 |
| Bra011125.1-P | Field mustard | mitochondrion | 27.6 | 30.29 |
| TraesCS4B01G137300.1 | Wheat | plastid | 32.29 | 27.31 |
| CDY37482 | Canola | plastid | 29.17 | 26.79 |
| Bra021503.1-P | Field mustard | plastid | 28.65 | 26.44 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 30.21 | 26.36 |
| CDY51734 | Canola | plastid | 28.65 | 26.32 |
| TraesCS5B01G150200.1 | Wheat | plastid | 28.65 | 24.34 |
| CDY55133 | Canola | plasma membrane | 26.56 | 23.94 |
| Bra021502.1-P | Field mustard | plastid | 26.04 | 23.36 |
| CDY51733 | Canola | plastid | 26.04 | 23.36 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G143000.1 | EnsemblPlantsGene:TraesCS1B01G143000 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF10 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:193003865..193004443
Molecular Weight (calculated)
20647.5 Da
IEP (calculated)
9.025
GRAVY (calculated)
0.655
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYGTIPIS SSSSSDAPPP GSSPLDFISR AKARGASALA TRQPWRELAD PKALAVPRGL GDAYLRARAN LAHFSMNYAI VVLGVVFLSL IWHPFSLIVF
101: LACMVAWVFL YFLRDVPLAL FGHTIGDGVV LAVLSALTLI LLLLTGATGN ILTSLLVGLV LVLLHALLHR LADSIDEEAG RWYTPVTPPQ PY
101: LACMVAWVFL YFLRDVPLAL FGHTIGDGVV LAVLSALTLI LLLLTGATGN ILTSLLVGLV LVLLHALLHR LADSIDEEAG RWYTPVTPPQ PY
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.