Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G255300.2 | Wheat | cytosol | 99.37 | 97.53 |
| TraesCS2A01G254800.2 | Wheat | cytosol | 99.16 | 97.33 |
| Os07t0138100-01 | Rice | cytosol | 87.42 | 86.16 |
| HORVU2Hr1G060900.13 | Barley | plastid | 88.47 | 85.77 |
| Zm00001d007849_P002 | Maize | cytosol, plastid | 82.18 | 82.88 |
| Zm00001d018772_P001 | Maize | peroxisome | 16.35 | 80.41 |
| KXG34371 | Sorghum | mitochondrion | 83.44 | 78.5 |
| GSMUA_Achr9P10020_001 | Banana | cytosol | 62.68 | 60.4 |
| GSMUA_Achr5P02150_001 | Banana | cytosol, plastid | 62.47 | 59.84 |
| KRH73621 | Soybean | endoplasmic reticulum | 60.17 | 58.57 |
| KRH14510 | Soybean | cytosol | 60.17 | 58.57 |
| VIT_12s0028g00830.t01 | Wine grape | cytosol | 60.59 | 57.8 |
| TraesCS4B01G018800.2 | Wheat | cytosol, plastid | 63.94 | 56.8 |
| AT2G30880.1 | Thale cress | cytosol, plastid | 56.81 | 53.77 |
| Solyc05g021100.2.1 | Tomato | cytosol, nucleus, plastid | 49.27 | 53.53 |
| CDX97786 | Canola | cytosol, plastid | 55.56 | 52.89 |
| CDY29635 | Canola | cytosol, plastid | 55.77 | 52.88 |
| Bra021674.1-P | Field mustard | cytosol | 55.77 | 52.88 |
| Bra022817.1-P | Field mustard | cytosol | 27.46 | 46.95 |
| CDY23978 | Canola | cytosol | 41.09 | 42.06 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G267300.1 | EnsemblPlantsGene:TraesCS2B01G267300 | Gene3D:2.30.29.30 | InterPro:IPR001849 | InterPro:IPR011993 | InterPro:PH-like_dom_sf |
| InterPro:PH_domain | ncoils:Coil | PANTHER:PTHR24356 | PANTHER:PTHR24356:SF215 | PFscan:PS50003 | SEG:seg |
| SMART:SM00233 | SUPFAM:SSF50729 | MapMan:27.4.3.3 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:359931686..359937664
Molecular Weight (calculated)
52750.9 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.508
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNANGGRS TMVGEMESSL ERVRRQLSSS STRHILQGPL LKRSDTLRKW NERWVILDPA TGKMEYKVRR SDTTVRGIIV FDSTSTVTLS PTNFHGLPKY
101: EGCCEYFLCA ETPSAARAWV STLHATQLVL QAHKQAVDSL GGNGSAKLGT VATVVAVANA TAIEASKEVE AAMKISLRAA LGSTTNKLSK GQLDDLTIMM
201: ETLRVKDDEL HQLLQDIRAR DSTIREITDK LQETAEAAET AASAAHAIDE ARRFLSSELE RLKQDQENQV ELSLLRLRES EEKSKLLAEE REHLLKERDS
301: ALQEAQMWRS ELGKARGNAV ILEAAVVRAE EKARVSAADA DMRIKEAVSK LESAAKEKEE LLALVDALKS QIQRQETSTK QICEERSELC STSKHMDMDD
401: DNVDKACLSD TDLIPIAENI VELDDEGVDI RTIGDTEWEN PHSSEVSDVR EVTTEAEENS LDIPVDSQPV ADDTFQG
101: EGCCEYFLCA ETPSAARAWV STLHATQLVL QAHKQAVDSL GGNGSAKLGT VATVVAVANA TAIEASKEVE AAMKISLRAA LGSTTNKLSK GQLDDLTIMM
201: ETLRVKDDEL HQLLQDIRAR DSTIREITDK LQETAEAAET AASAAHAIDE ARRFLSSELE RLKQDQENQV ELSLLRLRES EEKSKLLAEE REHLLKERDS
301: ALQEAQMWRS ELGKARGNAV ILEAAVVRAE EKARVSAADA DMRIKEAVSK LESAAKEKEE LLALVDALKS QIQRQETSTK QICEERSELC STSKHMDMDD
401: DNVDKACLSD TDLIPIAENI VELDDEGVDI RTIGDTEWEN PHSSEVSDVR EVTTEAEENS LDIPVDSQPV ADDTFQG
001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
Arabidopsis Description
At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.