Factsheet for VIT_12s0028g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g01720.t01
VIT_09s0002g02400.t01
VIT_13s0019g04380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	VIT_09s0002g02400.t01	AT1G55190.1	21798944
AT2G30880.1	VIT_08s0007g01720.t01	AT3G54120.1	21798944
AT2G30880.1	VIT_13s0019g04380.t01	AT4G30080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73621	Soybean	endoplasmic reticulum	82.0	83.67
KRH14510	Soybean	cytosol	81.8	83.47
Solyc05g021100.2.1	Tomato	cytosol, nucleus, plastid	67.4	76.77
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	72.0	72.29
Bra021674.1-P	Field mustard	cytosol	71.6	71.17
CDY29635	Canola	cytosol, plastid	71.6	71.17
CDX97786	Canola	cytosol, plastid	71.2	71.06
AT2G30880.1	Thale cress	cytosol, plastid	71.4	70.83
Os03t0666200-01	Rice	plasma membrane	70.2	70.2
TraesCS4D01G017000.2	Wheat	cytosol, plastid	69.6	69.6
TraesCS4A01G294800.1	Wheat	cytosol, plastid	69.2	69.2
KXG37877	Sorghum	cytosol	69.0	69.0
HORVU4Hr1G002870.1	Barley	cytosol	59.8	67.95
Zm00001d013589_P006	Maize	cytosol, plastid	67.6	67.6
GSMUA_Achr9P10020_001	Banana	cytosol	66.6	67.27
Bra022817.1-P	Field mustard	cytosol	37.2	66.67
TraesCS4B01G018800.2	Wheat	cytosol, plastid	69.6	64.8
Os07t0138100-01	Rice	cytosol	59.6	61.57
TraesCS2D01G255300.2	Wheat	cytosol	59.4	61.11
Zm00001d007849_P002	Maize	cytosol, plastid	57.6	60.89
TraesCS2A01G254800.2	Wheat	cytosol	59.0	60.7
TraesCS2B01G267300.1	Wheat	cytosol	57.8	60.59
Zm00001d034954_P001	Maize	extracellular	68.2	59.51
KXG34371	Sorghum	mitochondrion	57.8	57.0
HORVU2Hr1G060900.13	Barley	plastid	54.8	55.69
Os12t0505950-00	Rice	cytosol	8.6	53.75
Os05t0128700-00	Rice	cytosol	8.6	53.75
CDY23978	Canola	cytosol	50.0	53.65
Zm00001d018772_P001	Maize	peroxisome	10.4	53.61
Os05t0153901-00	Rice	cytosol	8.0	50.0
Zm00001d033157_P001	Maize	mitochondrion	7.0	22.29

Protein Annotations

EntrezGene:100254120	wikigene:100254120	Gene3D:2.30.29.30	MapMan:27.4.3.3	ProteinID:CBI22084	ProteinID:CBI22084.3
ncoils:Coil	UniProt:E0CU18	EMBL:FN595235	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0030312	GO:GO:0035556	GO:GO:0042742	InterPro:IPR001849	InterPro:IPR011993	EntrezGene:LOC100254120
wikigene:LOC100254120	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PANTHER:PTHR24356	PANTHER:PTHR24356:SF306
SMART:SM00233	SUPFAM:SSF50729	TIGR:TC70730	UniParc:UPI0001984361	ArrayExpress:VIT_12s0028g00830	EnsemblPlantsGene:VIT_12s0028g00830
EnsemblPlants:VIT_12s0028g00830.t01	unigene:Vvi.969	RefSeq:XP_002283267	RefSeq:XP_002283267.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:1365952..1380110

Molecular Weight (calculated)

55223.8 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.448

Length

500 amino acids

Sequence
(BLAST)

001: MASNGGAQRA VDAETSLEKI KRQLASGSGR NLLQGPLLKR SETLRKWNER WVILDPTTGK MEYKIRRNEV AVKGTIIFDA YSTITLSPVN FHGLPKYDGC
101: CFYIGTPQKK DYFLCAETPG AARAWVSTLH ATQLVLKAHK EAVNSLSGNG SAKLGTVATV VAAANSTALE CSKEIEAAMQ ISMRNALGVM MNKTSDGPMD
201: DLTIMKETLR VKDEELQHLA RDLRARDSTI KEIAEKLSDT AEAAEAAALA AHTMDEQRRM ACAEIDRLRK DSEKQLGSSM LKLKEFEEKV MALCKERDQL
301: VKQRDSAIQE AHLWRSELAK ARERVVILEG AVVRADEKVR VAEADAEARI KEAAQKESAA VKEKQELLAY VNMLQAQLQR QQIDTKKQVF EEKTESCSDI
401: GNTRPLTKHV DLSDENVDKA CLSVSRAVPV GENVVHLAMD QVNLRPVGDG EWSDIQATEA RIADVREIAP ETEGSSLDIP VVSLPVNNHH EQGANSFHQP

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.