Factsheet for Solyc05g021100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g121460.1.1
Solyc09g013110.2.1
Solyc10g076360.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	Solyc03g121460.1.1	AT1G55190.1	21798944
AT2G30880.1	Solyc09g013110.2.1	AT3G54120.1	21798944
AT2G30880.1	Solyc10g076360.1.1	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73621	Soybean	endoplasmic reticulum	75.4	67.55
VIT_12s0028g00830.t01	Wine grape	cytosol	76.77	67.4
KRH14510	Soybean	cytosol	75.17	67.35
HORVU4Hr1G002870.1	Barley	cytosol	61.05	60.91
CDX97786	Canola	cytosol, plastid	66.74	58.48
Bra021674.1-P	Field mustard	cytosol	66.74	58.25
CDY29635	Canola	cytosol, plastid	66.74	58.25
AT2G30880.1	Thale cress	cytosol, plastid	66.74	58.13
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	65.6	57.83
Bra022817.1-P	Field mustard	cytosol	35.31	55.56
Os05t0128700-00	Rice	cytosol	10.02	55.0
Os12t0505950-00	Rice	cytosol	10.02	55.0
GSMUA_Achr9P10020_001	Banana	cytosol	61.5	54.55
Os03t0666200-01	Rice	plasma membrane	61.96	54.4
KXG37877	Sorghum	cytosol	61.05	53.6
Zm00001d013589_P006	Maize	cytosol, plastid	60.82	53.4
TraesCS4D01G017000.2	Wheat	cytosol, plastid	60.82	53.4
TraesCS4A01G294800.1	Wheat	cytosol, plastid	60.59	53.2
Os05t0153901-00	Rice	cytosol	9.34	51.25
Zm00001d018772_P001	Maize	peroxisome	11.16	50.52
Os07t0138100-01	Rice	cytosol	55.58	50.41
TraesCS2D01G255300.2	Wheat	cytosol	55.35	50.0
TraesCS2A01G254800.2	Wheat	cytosol	55.35	50.0
TraesCS4B01G018800.2	Wheat	cytosol, plastid	60.82	49.72
Zm00001d007849_P002	Maize	cytosol, plastid	53.53	49.68
TraesCS2B01G267300.1	Wheat	cytosol	53.53	49.27
CDY23978	Canola	cytosol	50.11	47.21
Zm00001d034954_P001	Maize	extracellular	61.5	47.12
KXG34371	Sorghum	mitochondrion	54.21	46.94
HORVU2Hr1G060900.13	Barley	plastid	51.71	46.14
Zm00001d033157_P001	Maize	mitochondrion	5.24	14.65

Protein Annotations

Gene3D:2.30.29.30	MapMan:27.4.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0030312	GO:GO:0035556	GO:GO:0042742	InterPro:IPR011993	UniProt:K4BZG0	InterPro:PH-like_dom_sf
PANTHER:PTHR24356	PANTHER:PTHR24356:SF306	SUPFAM:SSF50729	EnsemblPlantsGene:Solyc05g021100.2	EnsemblPlants:Solyc05g021100.2.1	UniParc:UPI00027656B1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:26349656..26356402

Molecular Weight (calculated)

48631.2 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.523

Length

439 amino acids

Sequence
(BLAST)

001: MEYKARRNEP TIKGTIIFDA NSTISISPVN FHGLPKYNSC CFYIGTPQKK EYFLCAETPG AAKAWVSTLH ATQLVLKAHK EAVNSLSGNG SAKLGTVATV
101: VAAANSTALE ASKEIEAAMQ IAMRNALEAM LNRTPDSPMD DLSIMKETLR VKDEELQNLA REIRARDSTI KELADQLSET AEAAEAAASA AQTMNEQRKI
201: ACAEVERLKA DSEKQLVSSK SKLREFEEKF MTLSKEMDQL IKHRDSAIQE AHLWRSELAK AREQAVILEG AVVRAEEKVR VAEADAEARI REAVQRESAT
301: AKEKQELLAY VNMLQAQLTR QHVDMNQVFE KTESCSSSID NLPQTKHVDL SEENVDKACL SVSRAIDHVP PENVVDLTVD QTNHQSIENG EWSDIQPTES
401: RIADVREVAS ETERTSLDIP VVTSPSNVHQ DQGHNSHQP

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.