Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G267300.1 | Wheat | cytosol | 97.33 | 99.16 |
| TraesCS2D01G255300.2 | Wheat | cytosol | 98.97 | 98.97 |
| HORVU2Hr1G060900.13 | Barley | plastid | 88.48 | 87.4 |
| Os07t0138100-01 | Rice | cytosol | 87.04 | 87.4 |
| Zm00001d007849_P002 | Maize | cytosol, plastid | 82.1 | 84.36 |
| Zm00001d018772_P001 | Maize | peroxisome | 16.05 | 80.41 |
| KXG34371 | Sorghum | mitochondrion | 83.33 | 79.88 |
| TraesCS4A01G294800.1 | Wheat | cytosol, plastid | 64.2 | 62.4 |
| GSMUA_Achr9P10020_001 | Banana | cytosol | 63.17 | 62.02 |
| GSMUA_Achr5P02150_001 | Banana | cytosol, plastid | 62.96 | 61.45 |
| KRH73621 | Soybean | endoplasmic reticulum | 60.7 | 60.2 |
| KRH14510 | Soybean | cytosol | 60.7 | 60.2 |
| VIT_12s0028g00830.t01 | Wine grape | cytosol | 60.7 | 59.0 |
| Solyc05g021100.2.1 | Tomato | cytosol, nucleus, plastid | 50.0 | 55.35 |
| AT2G30880.1 | Thale cress | cytosol, plastid | 57.2 | 55.16 |
| CDX97786 | Canola | cytosol, plastid | 55.76 | 54.09 |
| CDY29635 | Canola | cytosol, plastid | 55.97 | 54.08 |
| Bra021674.1-P | Field mustard | cytosol | 55.97 | 54.08 |
| Bra022817.1-P | Field mustard | cytosol | 27.78 | 48.39 |
| CDY23978 | Canola | cytosol | 40.33 | 42.06 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G254800.2 | EnsemblPlantsGene:TraesCS2A01G254800 | Gene3D:2.30.29.30 | InterPro:IPR001849 | InterPro:IPR011993 | InterPro:PH-like_dom_sf |
| InterPro:PH_domain | ncoils:Coil | PANTHER:PTHR24356 | PANTHER:PTHR24356:SF215 | PFAM:PF00169 | PFscan:PS50003 |
| SEG:seg | SMART:SM00233 | SUPFAM:SSF50729 | MapMan:27.4.3.3 | : | : |
Description
No Description!
Coordinates
chr2A:-:388675474..388684096
Molecular Weight (calculated)
53794.2 Da
IEP (calculated)
4.649
GRAVY (calculated)
-0.513
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNANGGRS TMVGEMESSL ERVRRQLSST STRHILQGPL LKRSDTLRKW NERWVILDPA TGKMEYKVRR SDTTVRGIIV FDSTSTVTLS PTNFHGLPKY
101: EGCCVYIGTP QKKEYFLCAE TPSAARAWVS TLHATQLVLQ AHKQAVDSLG GNGSAKLGTV ATVVAVANAT AIEASKEVEA AMKISLRAAL GSTTNKLSKG
201: QLDDLTIMME TLRVKDDELH QLLQDIRARD STIREITDKL QETAEAAESA ASAAHAIDEA RRFLSSELER LKQDQENQVE LSLLRLRESE EKSKLLAEER
301: EHLLKERDSA LQEAQMWRSE LGKARGNAVI LEAAVVRAEE KARVSAADAD MRIKEAVSKL ESAAKEKEEL LALLDALKSQ IQRQETSTKQ ICEERSELCS
401: TSKHMDMDED NVDKACLSDT DLIPIAENIV ELDDEGVDIR TIGDTEWENP HSSEVSDVRE VTTEAEENSL DIPVDSQPVA DDTFQG
101: EGCCVYIGTP QKKEYFLCAE TPSAARAWVS TLHATQLVLQ AHKQAVDSLG GNGSAKLGTV ATVVAVANAT AIEASKEVEA AMKISLRAAL GSTTNKLSKG
201: QLDDLTIMME TLRVKDDELH QLLQDIRARD STIREITDKL QETAEAAESA ASAAHAIDEA RRFLSSELER LKQDQENQVE LSLLRLRESE EKSKLLAEER
301: EHLLKERDSA LQEAQMWRSE LGKARGNAVI LEAAVVRAEE KARVSAADAD MRIKEAVSKL ESAAKEKEEL LALLDALKSQ IQRQETSTKQ ICEERSELCS
401: TSKHMDMDED NVDKACLSDT DLIPIAENIV ELDDEGVDIR TIGDTEWENP HSSEVSDVRE VTTEAEENSL DIPVDSQPVA DDTFQG
001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
Arabidopsis Description
At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.