Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G253600.1 | Wheat | nucleus | 97.38 | 97.38 |
| TraesCS3B01G288800.1 | Wheat | nucleus | 96.86 | 97.37 |
| TraesCS3A01G256000.1 | Wheat | nucleus | 96.34 | 96.84 |
| Os01t0706000-01 | Rice | nucleus | 64.4 | 66.85 |
| KXG33215 | Sorghum | nucleus | 58.12 | 60.66 |
| CDX90784 | Canola | nucleus | 49.74 | 57.58 |
| CDY05125 | Canola | nucleus | 48.17 | 57.5 |
| Bra000728.1-P | Field mustard | nucleus | 48.69 | 57.06 |
| AT4G10920.2 | Thale cress | nucleus | 47.64 | 55.15 |
| GSMUA_Achr8P05370_001 | Banana | nucleus | 47.12 | 52.94 |
| Zm00001d011680_P002 | Maize | cytosol | 57.59 | 52.63 |
| KRH60062 | Soybean | nucleus | 44.5 | 51.2 |
| PGSC0003DMT400031971 | Potato | nucleus | 45.55 | 51.18 |
| VIT_02s0025g01700.t01 | Wine grape | nucleus | 49.74 | 50.8 |
| Solyc08g082580.2.1 | Tomato | nucleus | 46.07 | 50.29 |
| HORVU3Hr1G066410.6 | Barley | cytosol | 48.17 | 48.68 |
| KRH41342 | Soybean | nucleus | 46.07 | 44.22 |
| TraesCS5B01G301400.1 | Wheat | mitochondrion | 17.28 | 31.73 |
| Zm00001d043705_P005 | Maize | nucleus | 54.45 | 25.94 |
| KRH68921 | Soybean | nucleus | 40.84 | 13.98 |
| KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 37.7 | 13.14 |
| Bra037396.1-P | Field mustard | nucleus | 26.18 | 10.78 |
| CDY48492 | Canola | nucleus | 26.18 | 10.73 |
| CDY07161 | Canola | nucleus | 25.65 | 10.58 |
| AT4G00980.1 | Thale cress | nucleus | 25.65 | 10.04 |
Protein Annotations
| Gene3D:2.30.31.10 | MapMan:35.1 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR009044 | InterPro:KELP | InterPro:PC4 |
| PFAM:PF02229 | PFAM:PF08766 | PIRSF:PIRSF038156 | PANTHER:PTHR13215 | PANTHER:PTHR13215:SF6 | SUPFAM:SSF54447 |
| EnsemblPlantsGene:TraesCS3B01G284700 | EnsemblPlants:TraesCS3B01G284700.1 | SEG:seg | InterPro:ssDNA-bd_transcriptional_reg | : | : |
Description
No Description!
Coordinates
chr3B:+:456107968..456110756
Molecular Weight (calculated)
22057.7 Da
IEP (calculated)
4.400
GRAVY (calculated)
-1.211
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKTQDKVE AAVLEILRGS DMESLTEYKV RTAAADRLGI DLDLPLHKRF VRRLVEDYLK SLAEEEDQKQ KGGSRKEGKK KQQRQEEEEQ EEDEEKEGEE
101: EEEEEEDKGG EGKKEFDDNG DLILCRLSKN RRVTLQEFKG KTLVSIREYY IKDGKEMPTS KGMSMTVEQW ETFSKSVPAI EDAIKTLGES D
101: EEEEEEDKGG EGKKEFDDNG DLILCRLSKN RRVTLQEFKG KTLVSIREYY IKDGKEMPTS KGMSMTVEQW ETFSKSVPAI EDAIKTLGES D
001: MEKETKEKIE KTVIEILSES DMKEITEFKV RKLASEKLAI DLSEKSHKAF VRSVVEKFLD EERAREYENS QVNKEEEDGD KDCGKGNKEF DDDGDLIICR
101: LSDKRRVTIQ EFKGKSLVSI REYYKKDGKE LPTSKGISLT DEQWSTFKKN MPAIENAVKK MESRV
101: LSDKRRVTIQ EFKGKSLVSI REYYKKDGKE LPTSKGISLT DEQWSTFKKN MPAIENAVKK MESRV
Arabidopsis Description
KELPUncharacterized protein At4g10920 [Source:UniProtKB/TrEMBL;Acc:Q0WP62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.