Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G271000.1 | Wheat | cytosol | 85.28 | 44.84 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 84.97 | 44.82 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 84.97 | 44.46 |
| Os03t0707600-01 | Rice | nucleus | 81.6 | 42.56 |
| EER93592 | Sorghum | cytosol | 79.45 | 41.31 |
| Zm00001d033680_P001 | Maize | nucleus | 79.75 | 41.27 |
| Zm00001d013465_P001 | Maize | cytosol | 77.91 | 40.64 |
| GSMUA_Achr10P... | Banana | cytosol | 56.44 | 38.49 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 61.04 | 38.49 |
| KRH58636 | Soybean | nucleus | 60.74 | 37.86 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 54.91 | 37.37 |
| AT1G14920.1 | Thale cress | nucleus | 59.82 | 36.59 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 58.59 | 34.35 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 61.66 | 34.07 |
| Bra024875.1-P | Field mustard | nucleus | 58.28 | 33.16 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 57.98 | 33.04 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 49.08 | 31.94 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 57.06 | 31.69 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 47.85 | 30.23 |
| CDY04092 | Canola | cytosol | 49.08 | 29.96 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 39.88 | 29.82 |
| CDY64837 | Canola | cytosol | 49.39 | 29.7 |
| Bra017443.1-P | Field mustard | cytosol | 48.77 | 29.07 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 39.26 | 26.56 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 29.45 | 24.49 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 32.82 | 23.94 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 30.06 | 23.0 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 32.21 | 21.97 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 30.06 | 21.78 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 29.45 | 21.52 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 33.74 | 21.28 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 33.44 | 21.0 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 26.69 | 20.23 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 28.22 | 19.17 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 28.53 | 18.94 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 31.29 | 18.72 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 31.29 | 18.38 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 39.88 | 18.18 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 34.05 | 17.99 |
| TraesCS5A01G144000.1 | Wheat | plastid | 33.13 | 16.67 |
| TraesCS4A01G430600.1 | Wheat | plastid | 30.98 | 16.26 |
| TraesCS7A01G059000.1 | Wheat | plastid | 30.06 | 15.63 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G466700.1 | EnsemblPlantsGene:TraesCS4A01G466700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR005202 | InterPro:TF_DELLA | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | PFAM:PF03514 |
| PFscan:PS50985 | SEG:seg | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | : |
Description
No Description!
Coordinates
chr4A:-:729476085..729477069
Molecular Weight (calculated)
35784.3 Da
IEP (calculated)
5.177
GRAVY (calculated)
-0.196
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQNYLLDTG FPGLLHAHFY ESGPYLKFAH LTANQAILEA FAGCRRVHEV DFGIKQGMQW PAFLQALALG PGGPPSFRLT SIAPPRPNKN FLQQLGWNLA
101: QFAHTIQVDF HYRGLVAATL AYLEPSMLQP EGEEEDRNEE PEVIAINSVF EMHRLLAQPG ALEKVLGTVH ALRPRIITMV EQEVNHNGSF LDRFTESLQY
201: YSAMFDSLEG AGSGPSEVSS GAAAAGGTDQ AMSEVYLGQQ ICNVVACEGA ERTEHHETLE QWRNRLGNAG FETAHLGSNA YKQASTLLAL FSGADGYKVE
301: EQEGCLTLGW HTRPLIATSA WRLAAP
101: QFAHTIQVDF HYRGLVAATL AYLEPSMLQP EGEEEDRNEE PEVIAINSVF EMHRLLAQPG ALEKVLGTVH ALRPRIITMV EQEVNHNGSF LDRFTESLQY
201: YSAMFDSLEG AGSGPSEVSS GAAAAGGTDQ AMSEVYLGQQ ICNVVACEGA ERTEHHETLE QWRNRLGNAG FETAHLGSNA YKQASTLLAL FSGADGYKVE
301: EQEGCLTLGW HTRPLIATSA WRLAAP
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.